Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FGL73_RS05460 Genome accession   NZ_CP042408
Coordinates   1174421..1174846 (-) Length   141 a.a.
NCBI ID   WP_058207042.1    Uniprot ID   -
Organism   Lactococcus lactis strain CBA3619     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1143070..1188228 1174421..1174846 within 0


Gene organization within MGE regions


Location: 1143070..1188228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL73_RS05265 (FGL73_05265) - 1143070..1143270 (-) 201 WP_058203534.1 cold-shock protein -
  FGL73_RS05270 (FGL73_05270) - 1145112..1145483 (+) 372 WP_058206951.1 membrane lipoprotein lipid attachment site-containing protein -
  FGL73_RS05275 (FGL73_05275) - 1145543..1146226 (-) 684 WP_038600499.1 NYN domain-containing protein -
  FGL73_RS05280 (FGL73_05280) arsC 1146461..1146865 (-) 405 WP_058207015.1 arsenate reductase (thioredoxin) -
  FGL73_RS05285 (FGL73_05285) - 1147011..1147922 (-) 912 WP_146978166.1 NlpC/P60 family protein -
  FGL73_RS05290 (FGL73_05290) - 1148064..1149326 (-) 1263 WP_058206192.1 LysM peptidoglycan-binding domain-containing protein -
  FGL73_RS05295 (FGL73_05295) - 1149323..1149547 (-) 225 WP_058206191.1 phage holin -
  FGL73_RS05300 (FGL73_05300) - 1149561..1149782 (-) 222 WP_012897995.1 hemolysin XhlA family protein -
  FGL73_RS12785 - 1149857..1150978 (-) 1122 WP_261392351.1 pyocin knob domain-containing protein -
  FGL73_RS12555 - 1150978..1151115 (-) 138 WP_186758701.1 hypothetical protein -
  FGL73_RS05310 (FGL73_05310) - 1151112..1153649 (-) 2538 WP_058206189.1 gp58-like family protein -
  FGL73_RS05315 (FGL73_05315) - 1153661..1154026 (-) 366 WP_038600483.1 DUF6711 family protein -
  FGL73_RS05320 (FGL73_05320) - 1154038..1158819 (-) 4782 WP_146978167.1 phage tail protein -
  FGL73_RS05325 (FGL73_05325) - 1158851..1159222 (-) 372 WP_058206187.1 hypothetical protein -
  FGL73_RS05330 (FGL73_05330) - 1159246..1159656 (-) 411 WP_146978168.1 DUF6096 family protein -
  FGL73_RS05335 (FGL73_05335) - 1159730..1160161 (-) 432 WP_146978169.1 phage tail tube protein -
  FGL73_RS05340 (FGL73_05340) - 1160174..1160536 (-) 363 WP_058206184.1 hypothetical protein -
  FGL73_RS05345 (FGL73_05345) - 1160536..1161084 (-) 549 WP_058206183.1 hypothetical protein -
  FGL73_RS05350 (FGL73_05350) - 1161062..1161421 (-) 360 WP_058206182.1 hypothetical protein -
  FGL73_RS05355 (FGL73_05355) - 1161402..1161737 (-) 336 WP_058206181.1 phage head-tail connector protein -
  FGL73_RS05360 (FGL73_05360) - 1161751..1162788 (-) 1038 WP_058206180.1 major capsid protein -
  FGL73_RS05365 (FGL73_05365) - 1162799..1163482 (-) 684 WP_058206179.1 DUF4355 domain-containing protein -
  FGL73_RS05370 (FGL73_05370) - 1163580..1163924 (-) 345 WP_146978170.1 hypothetical protein -
  FGL73_RS05375 (FGL73_05375) - 1164026..1165132 (-) 1107 WP_146978171.1 minor capsid protein -
  FGL73_RS05380 (FGL73_05380) - 1165138..1165425 (-) 288 WP_058206176.1 ribosomal-processing cysteine protease Prp -
  FGL73_RS05385 (FGL73_05385) - 1165445..1166938 (-) 1494 WP_146978172.1 phage portal protein -
  FGL73_RS05390 (FGL73_05390) - 1166947..1168182 (-) 1236 WP_058206174.1 PBSX family phage terminase large subunit -
  FGL73_RS05395 (FGL73_05395) - 1168172..1168684 (-) 513 WP_146978173.1 terminase small subunit -
  FGL73_RS05400 (FGL73_05400) - 1169009..1169434 (-) 426 WP_058203511.1 RinA family protein -
  FGL73_RS12560 - 1169663..1169839 (-) 177 WP_161935082.1 hypothetical protein -
  FGL73_RS12565 - 1170284..1170439 (+) 156 WP_186758702.1 hypothetical protein -
  FGL73_RS05405 (FGL73_05405) - 1170478..1170693 (-) 216 WP_315903587.1 DUF1660 domain-containing protein -
  FGL73_RS12570 - 1170654..1170827 (-) 174 WP_161935098.1 hypothetical protein -
  FGL73_RS05410 (FGL73_05410) - 1170824..1171054 (-) 231 WP_058207051.1 hypothetical protein -
  FGL73_RS05415 (FGL73_05415) - 1171101..1171496 (-) 396 WP_146978174.1 hypothetical protein -
  FGL73_RS05420 (FGL73_05420) - 1171480..1171824 (-) 345 WP_146978175.1 hypothetical protein -
  FGL73_RS05425 (FGL73_05425) - 1171817..1172068 (-) 252 WP_146978176.1 6-O-methylguanine DNA methyltransferase -
  FGL73_RS05430 (FGL73_05430) - 1172061..1172387 (-) 327 WP_146978177.1 hypothetical protein -
  FGL73_RS05435 (FGL73_05435) - 1172380..1172526 (-) 147 WP_058207047.1 hypothetical protein -
  FGL73_RS05440 (FGL73_05440) - 1172628..1172873 (-) 246 WP_146978178.1 DUF1031 domain-containing protein -
  FGL73_RS05445 (FGL73_05445) - 1172870..1173244 (-) 375 WP_058207045.1 DUF1064 domain-containing protein -
  FGL73_RS05450 (FGL73_05450) - 1173225..1173506 (-) 282 WP_058207044.1 hypothetical protein -
  FGL73_RS05455 (FGL73_05455) - 1173490..1174290 (-) 801 WP_058207043.1 helix-turn-helix domain-containing protein -
  FGL73_RS05460 (FGL73_05460) ssb 1174421..1174846 (-) 426 WP_058207042.1 single-stranded DNA-binding protein Machinery gene
  FGL73_RS05465 (FGL73_05465) - 1174839..1175597 (-) 759 WP_146978179.1 Rad52/Rad22 family DNA repair protein -
  FGL73_RS05470 (FGL73_05470) - 1175606..1176001 (-) 396 WP_058207040.1 hypothetical protein -
  FGL73_RS05475 (FGL73_05475) - 1176100..1176300 (-) 201 WP_058207039.1 hypothetical protein -
  FGL73_RS05480 (FGL73_05480) - 1176407..1176841 (+) 435 WP_029343738.1 hypothetical protein -
  FGL73_RS12575 - 1176831..1176983 (-) 153 WP_161935097.1 hypothetical protein -
  FGL73_RS05485 (FGL73_05485) - 1177140..1177376 (-) 237 WP_011834775.1 helix-turn-helix domain-containing protein -
  FGL73_RS05490 (FGL73_05490) - 1177389..1178114 (-) 726 WP_058207038.1 ORF6C domain-containing protein -
  FGL73_RS05495 (FGL73_05495) - 1178124..1178342 (-) 219 WP_058207037.1 hypothetical protein -
  FGL73_RS05500 (FGL73_05500) - 1178357..1178605 (-) 249 WP_058207036.1 helix-turn-helix transcriptional regulator -
  FGL73_RS05505 (FGL73_05505) - 1178737..1178991 (+) 255 WP_058207035.1 DUF2513 domain-containing protein -
  FGL73_RS05510 (FGL73_05510) - 1178988..1179191 (-) 204 WP_017865020.1 hypothetical protein -
  FGL73_RS05520 (FGL73_05520) - 1179343..1180023 (+) 681 WP_058207034.1 hypothetical protein -
  FGL73_RS05525 (FGL73_05525) - 1180264..1180782 (+) 519 WP_261392352.1 helix-turn-helix domain-containing protein -
  FGL73_RS05530 (FGL73_05530) - 1180793..1181380 (+) 588 WP_146978180.1 hypothetical protein -
  FGL73_RS05535 (FGL73_05535) - 1181438..1182019 (+) 582 WP_058207031.1 hypothetical protein -
  FGL73_RS05540 (FGL73_05540) - 1182140..1183273 (+) 1134 WP_058207030.1 site-specific integrase -
  FGL73_RS05545 (FGL73_05545) - 1183479..1184453 (-) 975 WP_038601577.1 substrate-binding domain-containing protein -
  FGL73_RS05550 (FGL73_05550) - 1184465..1185367 (-) 903 WP_225513451.1 ABC transporter permease -
  FGL73_RS05555 (FGL73_05555) - 1185409..1186887 (-) 1479 WP_038601580.1 sugar ABC transporter ATP-binding protein -
  FGL73_RS05560 (FGL73_05560) rbsD 1186906..1187304 (-) 399 WP_015426834.1 D-ribose pyranase -
  FGL73_RS05565 (FGL73_05565) rbsK 1187326..1188228 (-) 903 WP_038601583.1 ribokinase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15686.40 Da        Isoelectric Point: 5.1972

>NTDB_id=377701 FGL73_RS05460 WP_058207042.1 1174421..1174846(-) (ssb) [Lactococcus lactis strain CBA3619]
MINNVTLAGRITKEPELRYTQQNKAVATFTLAVNRAFKNANGEREADFINCVIWGKSAENLANWTHKGQLIGVIGSIQTR
NYENQQGQRVYVTEVIANNFQVLEKSNQANGERVGNPAAKPQNNDSFGSDPMEISDDDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=377701 FGL73_RS05460 WP_058207042.1 1174421..1174846(-) (ssb) [Lactococcus lactis strain CBA3619]
ATGATTAATAATGTCACATTAGCAGGGCGGATCACTAAAGAACCTGAACTTAGATATACACAACAAAATAAAGCAGTTGC
CACTTTTACTCTTGCAGTTAATCGAGCATTTAAAAATGCTAATGGAGAAAGAGAAGCTGACTTTATCAATTGTGTTATTT
GGGGTAAATCAGCTGAAAACTTGGCCAATTGGACTCATAAAGGTCAGTTAATCGGAGTTATTGGTAGTATTCAAACTCGA
AACTACGAGAACCAACAAGGTCAACGAGTTTATGTAACAGAAGTCATTGCAAACAATTTTCAAGTACTTGAAAAAAGCAA
TCAAGCAAATGGTGAACGAGTTGGTAATCCAGCTGCAAAACCACAAAATAACGATTCTTTTGGAAGTGATCCAATGGAAA
TTTCAGATGATGACCTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.118

100

0.652
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.744

100

0.631
  ssbB/cilA Streptococcus mitis NCTC 12261

44.681

100

0.447
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.681

100

0.447
  ssbB/cilA Streptococcus pneumoniae Rx1

43.972

100

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.972

100

0.44
  ssbB/cilA Streptococcus pneumoniae D39

43.972

100

0.44
  ssbB/cilA Streptococcus pneumoniae R6

43.972

100

0.44
  ssbB/cilA Streptococcus mitis SK321

43.972

100

0.44
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

73.759

0.426
  ssbA Streptococcus mutans UA159

39.716

100

0.397
  ssbB Lactococcus lactis subsp. cremoris KW2

49.515

73.05

0.362

Multiple sequence alignment