Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | FRG19_RS06270 | Genome accession | NZ_CP042341 |
| Coordinates | 1307466..1307777 (+) | Length | 103 a.a. |
| NCBI ID | WP_029625707.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis strain BN2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1302466..1312777
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FRG19_RS06240 (FRG19_06230) | - | 1303241..1303444 (+) | 204 | WP_002433937.1 | YqgQ family protein | - |
| FRG19_RS06245 (FRG19_06235) | - | 1303441..1304427 (+) | 987 | WP_023350198.1 | ROK family glucokinase | - |
| FRG19_RS06250 (FRG19_06240) | - | 1304427..1304753 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| FRG19_RS06255 (FRG19_06245) | - | 1304753..1305376 (+) | 624 | WP_023350199.1 | MBL fold metallo-hydrolase | - |
| FRG19_RS06260 (FRG19_06250) | comGA | 1305434..1306408 (+) | 975 | WP_049427590.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FRG19_RS06265 (FRG19_06255) | comGB | 1306380..1307447 (+) | 1068 | WP_194251213.1 | competence type IV pilus assembly protein ComGB | - |
| FRG19_RS06270 (FRG19_06260) | comGC | 1307466..1307777 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FRG19_RS06275 (FRG19_06265) | comGD | 1307755..1308204 (+) | 450 | WP_162488576.1 | competence type IV pilus minor pilin ComGD | - |
| FRG19_RS06280 (FRG19_06270) | - | 1308191..1308490 (+) | 300 | WP_023350203.1 | hypothetical protein | - |
| FRG19_RS06285 (FRG19_06275) | comGF | 1308408..1308899 (+) | 492 | WP_194251214.1 | competence type IV pilus minor pilin ComGF | - |
| FRG19_RS06290 (FRG19_06285) | - | 1309069..1309578 (+) | 510 | WP_336390744.1 | shikimate kinase | - |
| FRG19_RS06295 (FRG19_06290) | gcvT | 1309787..1310878 (+) | 1092 | WP_049427596.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| FRG19_RS06300 (FRG19_06295) | gcvPA | 1310897..1312243 (+) | 1347 | WP_194251215.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11345.43 Da Isoelectric Point: 9.7122
>NTDB_id=377163 FRG19_RS06270 WP_029625707.1 1307466..1307777(+) (comGC) [Staphylococcus capitis strain BN2]
MLKKLKKSKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMVNSQIEAYTLKHNRNPNNIEELIAEGFI
KEGQKNCKSGQTISISNGEAVAN
MLKKLKKSKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHIQSTGCDAQVKMVNSQIEAYTLKHNRNPNNIEELIAEGFI
KEGQKNCKSGQTISISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=377163 FRG19_RS06270 WP_029625707.1 1307466..1307777(+) (comGC) [Staphylococcus capitis strain BN2]
ATATTAAAAAAACTAAAAAAATCTAAAGCTTTCACTTTAATTGAAATGTTACTTGTTTTATTAATTATTAGTTTATTACT
TATTTTAATTATACCTAATATTGCCAAACAAACAGCACATATCCAATCTACTGGTTGTGATGCTCAAGTAAAAATGGTAA
ATAGTCAAATTGAAGCATATACATTAAAGCATAATCGTAACCCTAATAATATTGAAGAATTAATTGCTGAAGGTTTTATA
AAAGAAGGACAGAAAAATTGTAAATCCGGACAAACTATTAGTATTTCAAATGGTGAGGCTGTTGCGAACTAA
ATATTAAAAAAACTAAAAAAATCTAAAGCTTTCACTTTAATTGAAATGTTACTTGTTTTATTAATTATTAGTTTATTACT
TATTTTAATTATACCTAATATTGCCAAACAAACAGCACATATCCAATCTACTGGTTGTGATGCTCAAGTAAAAATGGTAA
ATAGTCAAATTGAAGCATATACATTAAAGCATAATCGTAACCCTAATAATATTGAAGAATTAATTGCTGAAGGTTTTATA
AAAGAAGGACAGAAAAATTGTAAATCCGGACAAACTATTAGTATTTCAAATGGTGAGGCTGTTGCGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus N315 |
86.408 |
100 |
0.864 |
| comGC | Staphylococcus aureus MW2 |
86.408 |
100 |
0.864 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.631 |
100 |
0.456 |
| comGC/cglC | Streptococcus mitis SK321 |
45.098 |
99.029 |
0.447 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.118 |
99.029 |
0.437 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
48.837 |
83.495 |
0.408 |
| comYC | Streptococcus mutans UA159 |
46.591 |
85.437 |
0.398 |
| comYC | Streptococcus mutans UA140 |
46.591 |
85.437 |
0.398 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50.633 |
76.699 |
0.388 |
| comYC | Streptococcus suis isolate S10 |
50 |
75.728 |
0.379 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
88.35 |
0.369 |