Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | FRG19_RS06260 | Genome accession | NZ_CP042341 |
| Coordinates | 1305434..1306408 (+) | Length | 324 a.a. |
| NCBI ID | WP_049427590.1 | Uniprot ID | - |
| Organism | Staphylococcus capitis strain BN2 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1300434..1311408
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FRG19_RS06225 (FRG19_06215) | rpmG | 1300947..1301096 (+) | 150 | WP_002433802.1 | 50S ribosomal protein L33 | - |
| FRG19_RS06230 (FRG19_06220) | - | 1301245..1301796 (+) | 552 | WP_030063896.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| FRG19_RS06235 (FRG19_06225) | - | 1301797..1303260 (+) | 1464 | WP_064212364.1 | rhomboid family intramembrane serine protease | - |
| FRG19_RS06240 (FRG19_06230) | - | 1303241..1303444 (+) | 204 | WP_002433937.1 | YqgQ family protein | - |
| FRG19_RS06245 (FRG19_06235) | - | 1303441..1304427 (+) | 987 | WP_023350198.1 | ROK family glucokinase | - |
| FRG19_RS06250 (FRG19_06240) | - | 1304427..1304753 (+) | 327 | WP_002433945.1 | MTH1187 family thiamine-binding protein | - |
| FRG19_RS06255 (FRG19_06245) | - | 1304753..1305376 (+) | 624 | WP_023350199.1 | MBL fold metallo-hydrolase | - |
| FRG19_RS06260 (FRG19_06250) | comGA | 1305434..1306408 (+) | 975 | WP_049427590.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FRG19_RS06265 (FRG19_06255) | comGB | 1306380..1307447 (+) | 1068 | WP_194251213.1 | competence type IV pilus assembly protein ComGB | - |
| FRG19_RS06270 (FRG19_06260) | comGC | 1307466..1307777 (+) | 312 | WP_029625707.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FRG19_RS06275 (FRG19_06265) | comGD | 1307755..1308204 (+) | 450 | WP_162488576.1 | competence type IV pilus minor pilin ComGD | - |
| FRG19_RS06280 (FRG19_06270) | - | 1308191..1308490 (+) | 300 | WP_023350203.1 | hypothetical protein | - |
| FRG19_RS06285 (FRG19_06275) | comGF | 1308408..1308899 (+) | 492 | WP_194251214.1 | competence type IV pilus minor pilin ComGF | - |
| FRG19_RS06290 (FRG19_06285) | - | 1309069..1309578 (+) | 510 | WP_336390744.1 | shikimate kinase | - |
| FRG19_RS06295 (FRG19_06290) | gcvT | 1309787..1310878 (+) | 1092 | WP_049427596.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37028.86 Da Isoelectric Point: 7.7305
>NTDB_id=377162 FRG19_RS06260 WP_049427590.1 1305434..1306408(+) (comGA) [Staphylococcus capitis strain BN2]
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSIKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
MKMLFQEIVNYAIKHAASDIHFIPTEHHTLIKLRINDQLINYDTLAHAIYKKLLVYMKFKSGLDVSTQQLAQSGRYTYKL
QNMYYLRISTLPLSLGNESCVIRIVPQYFQQRRDSYEFKDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVMHAHQNLNLN
VISIEDPVEQLLDGITQISVNEKAGINYTNSIKAILRCDPDVILIGEIRDAYIAKCVIQASLSGHLVLTTLHANDCKGAL
LRLLEMGVTVQELCQSINLISNQRLITTQTNTRELVCEVMNQNQVEYFFEHNHELPNSFTKLATHLTNLSKEGVICEEVV
NKYT
Nucleotide
Download Length: 975 bp
>NTDB_id=377162 FRG19_RS06260 WP_049427590.1 1305434..1306408(+) (comGA) [Staphylococcus capitis strain BN2]
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGAATAAA
TTATACTAACTCTATTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCCAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAGCACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
ATGAAAATGTTATTCCAAGAGATAGTTAATTATGCTATAAAGCACGCTGCAAGTGATATACATTTTATTCCTACTGAGCA
CCATACTTTAATTAAACTAAGAATCAACGATCAACTTATTAATTACGATACACTGGCACATGCTATTTACAAAAAGTTAC
TTGTTTATATGAAGTTCAAATCAGGCTTAGATGTTTCGACCCAACAGCTAGCCCAAAGTGGAAGATATACTTATAAATTG
CAAAATATGTATTACTTAAGAATCTCTACACTGCCTTTATCTTTAGGTAATGAAAGTTGCGTTATAAGAATCGTACCTCA
ATATTTCCAACAAAGACGTGACTCATATGAATTTAAAGATTTTAAGCACTTAATGAATAAAAAACAAGGATTATTACTTT
TTAGTGGTCCAACTGGCTCTGGGAAAAGCACTTTAATGTATCAAATGGTAATGCATGCCCATCAAAATTTAAATTTAAAT
GTTATTTCAATTGAAGATCCTGTTGAGCAATTATTAGATGGGATAACTCAAATTTCAGTTAATGAAAAGGCCGGAATAAA
TTATACTAACTCTATTAAAGCCATACTTAGATGTGACCCTGATGTCATTTTGATTGGAGAAATTCGTGATGCTTATATTG
CTAAATGTGTTATACAAGCAAGTCTAAGTGGTCATTTAGTGCTTACAACTTTACATGCCAATGATTGTAAAGGGGCTTTA
CTTCGTCTACTAGAAATGGGTGTAACAGTGCAAGAATTATGTCAATCTATAAATTTAATATCTAATCAAAGACTTATCAC
CACACAAACTAATACGCGTGAATTAGTTTGTGAAGTAATGAACCAAAATCAAGTAGAATACTTTTTTGAGCACAATCATG
AACTACCAAATAGCTTCACTAAGCTGGCTACACATCTAACTAATCTATCTAAGGAAGGGGTAATTTGTGAAGAGGTTGTT
AATAAGTATACTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
70.279 |
99.691 |
0.701 |
| comGA | Staphylococcus aureus N315 |
70.279 |
99.691 |
0.701 |