Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | FP481_RS12320 | Genome accession | NZ_CP042157 |
| Coordinates | 2436428..2436739 (-) | Length | 103 a.a. |
| NCBI ID | WP_000472253.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain B3-17D | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2431428..2441739
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FP481_RS12285 (FP481_12285) | gcvPA | 2431930..2433276 (-) | 1347 | WP_000019691.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
| FP481_RS12290 (FP481_12290) | gcvT | 2433296..2434387 (-) | 1092 | WP_000093349.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| FP481_RS12295 (FP481_12295) | - | 2434546..2435070 (-) | 525 | WP_001015120.1 | shikimate kinase | - |
| FP481_RS12300 (FP481_12300) | - | 2435060..2435206 (-) | 147 | WP_001792109.1 | hypothetical protein | - |
| FP481_RS12305 (FP481_12305) | comGF | 2435303..2435800 (-) | 498 | WP_001788897.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| FP481_RS12310 (FP481_12310) | comGE | 2435718..2436017 (-) | 300 | WP_000844410.1 | hypothetical protein | Machinery gene |
| FP481_RS12315 (FP481_12315) | comGD | 2436004..2436450 (-) | 447 | WP_001788899.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| FP481_RS12320 (FP481_12320) | comGC | 2436428..2436739 (-) | 312 | WP_000472253.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| FP481_RS12325 (FP481_12325) | comGB | 2436753..2437823 (-) | 1071 | WP_000776422.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| FP481_RS12330 (FP481_12330) | comGA | 2437795..2438769 (-) | 975 | WP_000697220.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| FP481_RS12335 (FP481_12335) | - | 2438821..2439444 (-) | 624 | WP_001223008.1 | MBL fold metallo-hydrolase | - |
| FP481_RS12340 (FP481_12340) | - | 2439441..2439770 (-) | 330 | WP_001018871.1 | MTH1187 family thiamine-binding protein | - |
| FP481_RS12345 (FP481_12345) | - | 2439770..2440756 (-) | 987 | WP_000161314.1 | ROK family glucokinase | - |
| FP481_RS12350 (FP481_12350) | - | 2440753..2440956 (-) | 204 | WP_000087561.1 | YqgQ family protein | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11315.40 Da Isoelectric Point: 9.1992
>NTDB_id=375787 FP481_RS12320 WP_000472253.1 2436428..2436739(-) (comGC) [Staphylococcus aureus strain B3-17D]
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKKTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN
MFKFLKKTQAFTLIEMLLVLLIISLLLILIIPNIAKKTAHIQSTGCNAQVKMVNSQIEAYALKHNRNPSSIEDLIADGFI
KEAQKTCKSGETITISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=375787 FP481_RS12320 WP_000472253.1 2436428..2436739(-) (comGC) [Staphylococcus aureus strain B3-17D]
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAAAAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
ATGTTTAAATTTCTTAAGAAAACTCAAGCGTTTACATTGATAGAGATGCTATTAGTGTTATTAATCATCAGTTTATTATT
AATTTTAATCATTCCAAATATTGCTAAAAAAACTGCTCACATACAATCAACAGGTTGTAATGCACAGGTAAAAATGGTTA
ATAGTCAAATTGAAGCGTATGCATTGAAACATAATAGAAATCCATCGTCTATTGAAGACTTAATTGCAGATGGTTTTATA
AAAGAAGCACAAAAGACATGTAAATCAGGAGAGACAATAACAATTAGTAATGGAGAAGCAGTTGCAAATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
99.029 |
100 |
0.99 |
| comGC | Staphylococcus aureus N315 |
99.029 |
100 |
0.99 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
45.098 |
99.029 |
0.447 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
45.098 |
99.029 |
0.447 |
| comGC/cglC | Streptococcus pneumoniae D39 |
45.098 |
99.029 |
0.447 |
| comGC/cglC | Streptococcus pneumoniae R6 |
45.098 |
99.029 |
0.447 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50 |
83.495 |
0.417 |
| comGC/cglC | Streptococcus mitis SK321 |
50 |
83.495 |
0.417 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
41.837 |
95.146 |
0.398 |
| comYC | Streptococcus suis isolate S10 |
48.718 |
75.728 |
0.369 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
88.35 |
0.369 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
46.341 |
79.612 |
0.369 |