Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   G9V97_RS18845 Genome accession   NZ_CP049936
Coordinates   3985435..3985950 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain JL05     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3980435..3990950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G9V97_RS18800 (G9V97_18795) csrA 3980888..3981073 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  G9V97_RS18830 (G9V97_18825) yqaB 3982665..3983231 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  G9V97_RS18835 (G9V97_18830) yqaA 3983228..3983656 (+) 429 WP_001287457.1 YqaA family protein -
  G9V97_RS18840 (G9V97_18835) gshA 3983729..3985285 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  G9V97_RS18845 (G9V97_18840) luxS 3985435..3985950 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  G9V97_RS18850 (G9V97_18845) emrB 3986014..3987552 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  G9V97_RS18855 (G9V97_18850) emrA 3987569..3988741 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  G9V97_RS18860 (G9V97_18855) emrR 3988868..3989398 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  G9V97_RS18870 (G9V97_18865) ygaH 3989489..3989824 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  G9V97_RS18875 (G9V97_18870) ygaZ 3989814..3990551 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=375786 G9V97_RS18845 WP_001130211.1 3985435..3985950(+) (luxS) [Escherichia coli strain JL05]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=375786 G9V97_RS18845 WP_001130211.1 3985435..3985950(+) (luxS) [Escherichia coli strain JL05]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment