Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | FPL13_RS08585 | Genome accession | NZ_CP041968 |
| Coordinates | 1756870..1757286 (-) | Length | 138 a.a. |
| NCBI ID | WP_049512360.1 | Uniprot ID | A0A7L8W982 |
| Organism | Streptococcus sp. KS 6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1724787..1770173 | 1756870..1757286 | within | 0 |
Gene organization within MGE regions
Location: 1724787..1770173
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FPL13_RS08405 (FPL13_08510) | - | 1724787..1727006 (-) | 2220 | WP_192208581.1 | acyltransferase family protein | - |
| FPL13_RS08410 (FPL13_08515) | - | 1727015..1727443 (-) | 429 | WP_049511841.1 | low molecular weight protein-tyrosine-phosphatase | - |
| FPL13_RS09915 | - | 1727633..1728148 (-) | 516 | Protein_1652 | transposase | - |
| FPL13_RS09920 | - | 1728199..1729107 (-) | 909 | WP_313769792.1 | transposase | - |
| FPL13_RS08420 (FPL13_08530) | - | 1729360..1730417 (+) | 1058 | Protein_1654 | transposase | - |
| FPL13_RS08425 (FPL13_08535) | - | 1730581..1731426 (-) | 846 | WP_003028548.1 | class C sortase | - |
| FPL13_RS08430 (FPL13_08540) | - | 1731514..1732977 (-) | 1464 | WP_049514689.1 | SpaH/EbpB family LPXTG-anchored major pilin | - |
| FPL13_RS08435 (FPL13_08545) | - | 1733031..1735478 (-) | 2448 | WP_106387814.1 | Sgo0707 family adhesin | - |
| FPL13_RS08440 (FPL13_08550) | - | 1735936..1736676 (-) | 741 | WP_192208582.1 | CHAP domain-containing protein | - |
| FPL13_RS08445 (FPL13_08555) | - | 1736678..1737010 (-) | 333 | WP_192208583.1 | phage holin | - |
| FPL13_RS08450 (FPL13_08560) | - | 1737012..1737413 (-) | 402 | WP_192208584.1 | hypothetical protein | - |
| FPL13_RS08455 (FPL13_08565) | - | 1737429..1737683 (-) | 255 | WP_134970799.1 | hypothetical protein | - |
| FPL13_RS08460 (FPL13_08570) | - | 1737711..1738589 (-) | 879 | WP_192208585.1 | hypothetical protein | - |
| FPL13_RS08465 (FPL13_08575) | - | 1738538..1741456 (-) | 2919 | WP_192208586.1 | phage tail protein | - |
| FPL13_RS08470 (FPL13_08580) | - | 1741453..1742964 (-) | 1512 | WP_225620225.1 | distal tail protein Dit | - |
| FPL13_RS08475 (FPL13_08585) | - | 1742966..1745350 (-) | 2385 | WP_192208588.1 | phage tail protein | - |
| FPL13_RS08480 (FPL13_08590) | - | 1745350..1745721 (-) | 372 | WP_192208589.1 | DUF5361 domain-containing protein | - |
| FPL13_RS08485 (FPL13_08595) | - | 1745736..1746020 (-) | 285 | WP_192208590.1 | hypothetical protein | - |
| FPL13_RS08490 (FPL13_08600) | - | 1746042..1746599 (-) | 558 | WP_192208591.1 | phage tail protein | - |
| FPL13_RS08495 (FPL13_08605) | - | 1746614..1746955 (-) | 342 | WP_192208592.1 | hypothetical protein | - |
| FPL13_RS08500 (FPL13_08610) | - | 1746956..1747192 (-) | 237 | WP_192208593.1 | hypothetical protein | - |
| FPL13_RS08505 (FPL13_08615) | - | 1747185..1747523 (-) | 339 | WP_192208594.1 | hypothetical protein | - |
| FPL13_RS08510 (FPL13_08620) | - | 1747510..1747905 (-) | 396 | WP_192208595.1 | phage Gp19/Gp15/Gp42 family protein | - |
| FPL13_RS08515 (FPL13_08625) | - | 1747927..1748151 (-) | 225 | WP_225620226.1 | HeH/LEM domain-containing protein | - |
| FPL13_RS08520 (FPL13_08630) | - | 1748154..1749053 (-) | 900 | WP_192208596.1 | phage major capsid protein | - |
| FPL13_RS08525 (FPL13_08635) | - | 1749068..1749568 (-) | 501 | WP_192208597.1 | DUF4355 domain-containing protein | - |
| FPL13_RS08530 (FPL13_08640) | - | 1749648..1751066 (-) | 1419 | WP_192208598.1 | terminase | - |
| FPL13_RS08535 (FPL13_08645) | - | 1751129..1751380 (-) | 252 | WP_192208599.1 | DUF6275 family protein | - |
| FPL13_RS08540 (FPL13_08650) | - | 1751383..1751634 (-) | 252 | WP_150890591.1 | hypothetical protein | - |
| FPL13_RS09825 | - | 1751603..1751764 (-) | 162 | WP_225620227.1 | hypothetical protein | - |
| FPL13_RS08545 (FPL13_08655) | - | 1751761..1751985 (-) | 225 | WP_225620228.1 | hypothetical protein | - |
| FPL13_RS08550 (FPL13_08660) | - | 1751975..1753369 (-) | 1395 | WP_192208600.1 | hypothetical protein | - |
| FPL13_RS08555 (FPL13_08665) | - | 1753362..1754633 (-) | 1272 | WP_192208601.1 | phage portal protein | - |
| FPL13_RS08560 (FPL13_08670) | - | 1754736..1755074 (-) | 339 | WP_049512351.1 | HNH endonuclease signature motif containing protein | - |
| FPL13_RS08565 (FPL13_08675) | - | 1755265..1755831 (-) | 567 | WP_049512353.1 | site-specific integrase | - |
| FPL13_RS08570 (FPL13_08680) | - | 1755931..1756368 (-) | 438 | WP_192208602.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| FPL13_RS08575 (FPL13_08685) | - | 1756373..1756564 (-) | 192 | WP_192208603.1 | hypothetical protein | - |
| FPL13_RS08580 (FPL13_08690) | - | 1756605..1756859 (-) | 255 | WP_049512358.1 | hypothetical protein | - |
| FPL13_RS08585 (FPL13_08695) | ssb | 1756870..1757286 (-) | 417 | WP_049512360.1 | single-stranded DNA-binding protein | Machinery gene |
| FPL13_RS08590 (FPL13_08700) | - | 1757279..1757686 (-) | 408 | WP_049512362.1 | YopX family protein | - |
| FPL13_RS08595 (FPL13_08705) | - | 1757700..1757885 (-) | 186 | WP_225620229.1 | hypothetical protein | - |
| FPL13_RS08600 (FPL13_08710) | - | 1757898..1758230 (-) | 333 | WP_053092969.1 | DUF1372 family protein | - |
| FPL13_RS08605 (FPL13_08715) | - | 1758227..1758715 (-) | 489 | WP_192208604.1 | MazG-like family protein | - |
| FPL13_RS08610 (FPL13_08720) | - | 1758699..1758962 (-) | 264 | WP_192208605.1 | hypothetical protein | - |
| FPL13_RS08615 (FPL13_08725) | - | 1758973..1759647 (-) | 675 | WP_192208606.1 | DNA methyltransferase | - |
| FPL13_RS08620 (FPL13_08730) | - | 1759647..1760468 (-) | 822 | WP_192208607.1 | ATP-binding protein | - |
| FPL13_RS08625 (FPL13_08735) | - | 1760469..1761164 (-) | 696 | WP_192208608.1 | conserved phage C-terminal domain-containing protein | - |
| FPL13_RS08630 (FPL13_08740) | dnaB | 1761214..1762548 (-) | 1335 | WP_192208609.1 | replicative DNA helicase | - |
| FPL13_RS08635 (FPL13_08745) | - | 1762557..1762775 (-) | 219 | WP_192208610.1 | hypothetical protein | - |
| FPL13_RS08640 (FPL13_08750) | - | 1762856..1763113 (-) | 258 | WP_192208611.1 | DNA-binding protein | - |
| FPL13_RS08645 (FPL13_08755) | - | 1763106..1763447 (-) | 342 | WP_192208612.1 | hypothetical protein | - |
| FPL13_RS08650 (FPL13_08760) | - | 1763447..1763659 (-) | 213 | WP_192208613.1 | helix-turn-helix domain-containing protein | - |
| FPL13_RS08655 (FPL13_08765) | - | 1763718..1764188 (+) | 471 | WP_192208614.1 | hypothetical protein | - |
| FPL13_RS08660 (FPL13_08770) | - | 1764171..1764335 (-) | 165 | WP_192208615.1 | hypothetical protein | - |
| FPL13_RS08665 (FPL13_08775) | - | 1764623..1764973 (+) | 351 | WP_192208616.1 | helix-turn-helix domain-containing protein | - |
| FPL13_RS08670 (FPL13_08780) | - | 1764970..1765869 (+) | 900 | WP_225620230.1 | Abi family protein | - |
| FPL13_RS08675 (FPL13_08785) | - | 1766022..1766408 (+) | 387 | WP_192208618.1 | ImmA/IrrE family metallo-endopeptidase | - |
| FPL13_RS08680 (FPL13_08790) | - | 1766463..1767059 (+) | 597 | WP_192208619.1 | CD20-like domain-containing protein | - |
| FPL13_RS08685 (FPL13_08800) | - | 1767237..1768385 (+) | 1149 | WP_192208620.1 | tyrosine-type recombinase/integrase | - |
| FPL13_RS08690 (FPL13_08805) | - | 1768637..1769200 (-) | 564 | WP_049514687.1 | nucleotidyltransferase family protein | - |
Sequence
Protein
Download Length: 138 a.a. Molecular weight: 15723.57 Da Isoelectric Point: 4.5423
>NTDB_id=375032 FPL13_RS08585 WP_049512360.1 1756870..1757286(-) (ssb) [Streptococcus sp. KS 6]
MINNVVLIGRLTRDVELRYTPSNIAVATFNLAVNRNFKNQDGEREADFINCVMWQKSAENLANWTRKGMLIGITGRIQTR
SYENQQGQRVYVTEVVADSFQILEKRDNSANQSSMDSQMPPNFGDSQPMDISDDDLPF
MINNVVLIGRLTRDVELRYTPSNIAVATFNLAVNRNFKNQDGEREADFINCVMWQKSAENLANWTRKGMLIGITGRIQTR
SYENQQGQRVYVTEVVADSFQILEKRDNSANQSSMDSQMPPNFGDSQPMDISDDDLPF
Nucleotide
Download Length: 417 bp
>NTDB_id=375032 FPL13_RS08585 WP_049512360.1 1756870..1757286(-) (ssb) [Streptococcus sp. KS 6]
ATGATTAACAATGTTGTCTTGATTGGTCGCTTGACACGAGATGTTGAGCTACGCTACACACCATCAAATATAGCTGTCGC
GACTTTCAACTTGGCCGTAAATCGCAATTTTAAAAATCAAGATGGCGAGCGAGAAGCTGATTTTATAAATTGTGTGATGT
GGCAGAAGTCGGCTGAGAATCTAGCTAACTGGACACGAAAAGGTATGTTGATTGGCATTACTGGACGAATCCAAACCAGA
AGCTATGAAAATCAACAAGGTCAACGTGTCTATGTGACGGAGGTTGTGGCTGACAGTTTTCAAATATTAGAAAAACGTGA
TAATTCTGCTAATCAGTCAAGCATGGATAGCCAGATGCCACCAAATTTCGGGGATAGCCAGCCTATGGATATTTCAGATG
ATGATCTACCATTTTAG
ATGATTAACAATGTTGTCTTGATTGGTCGCTTGACACGAGATGTTGAGCTACGCTACACACCATCAAATATAGCTGTCGC
GACTTTCAACTTGGCCGTAAATCGCAATTTTAAAAATCAAGATGGCGAGCGAGAAGCTGATTTTATAAATTGTGTGATGT
GGCAGAAGTCGGCTGAGAATCTAGCTAACTGGACACGAAAAGGTATGTTGATTGGCATTACTGGACGAATCCAAACCAGA
AGCTATGAAAATCAACAAGGTCAACGTGTCTATGTGACGGAGGTTGTGGCTGACAGTTTTCAAATATTAGAAAAACGTGA
TAATTCTGCTAATCAGTCAAGCATGGATAGCCAGATGCCACCAAATTTCGGGGATAGCCAGCCTATGGATATTTCAGATG
ATGATCTACCATTTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.118 |
100 |
0.667 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.581 |
100 |
0.63 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
47.857 |
100 |
0.486 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
56.604 |
76.812 |
0.435 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.478 |
100 |
0.435 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.478 |
100 |
0.435 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.754 |
100 |
0.428 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.754 |
100 |
0.428 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.754 |
100 |
0.428 |
| ssbA | Streptococcus mutans UA159 |
42.754 |
100 |
0.428 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.754 |
100 |
0.428 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
45.133 |
81.884 |
0.37 |