Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | GC56T3_RS16710 | Genome accession | NC_014206 |
| Coordinates | 3375132..3375491 (-) | Length | 119 a.a. |
| NCBI ID | WP_011232661.1 | Uniprot ID | U2WRT9 |
| Organism | Geobacillus sp. C56-T3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3370132..3380491
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GC56T3_RS16690 (GC56T3_3199) | - | 3371553..3372332 (-) | 780 | WP_013146481.1 | hypothetical protein | - |
| GC56T3_RS16695 (GC56T3_3200) | - | 3372378..3373730 (-) | 1353 | WP_013146482.1 | peptidoglycan-binding protein | - |
| GC56T3_RS16700 (GC56T3_3201) | - | 3373885..3374394 (-) | 510 | WP_013146483.1 | hypothetical protein | - |
| GC56T3_RS16705 (GC56T3_3202) | - | 3374604..3375011 (+) | 408 | WP_013146484.1 | helix-turn-helix domain-containing protein | - |
| GC56T3_RS16710 (GC56T3_3203) | ssbB | 3375132..3375491 (-) | 360 | WP_011232661.1 | single-stranded DNA-binding protein | Machinery gene |
| GC56T3_RS16715 (GC56T3_3204) | - | 3375762..3376202 (+) | 441 | WP_013146485.1 | YwpF-like family protein | - |
| GC56T3_RS16720 (GC56T3_3205) | - | 3376259..3376888 (-) | 630 | WP_013146486.1 | class D sortase | - |
| GC56T3_RS16725 (GC56T3_3206) | - | 3376895..3377794 (-) | 900 | WP_013146487.1 | processed acidic surface protein | - |
| GC56T3_RS16735 (GC56T3_3207) | - | 3378176..3379552 (-) | 1377 | WP_013146488.1 | aspartate kinase | - |
| GC56T3_RS16740 (GC56T3_3209) | - | 3380018..3380452 (-) | 435 | WP_013146490.1 | DUF1284 domain-containing protein | - |
Sequence
Protein
Download Length: 119 a.a. Molecular weight: 13427.38 Da Isoelectric Point: 9.8293
>NTDB_id=37370 GC56T3_RS16710 WP_011232661.1 3375132..3375491(-) (ssbB) [Geobacillus sp. C56-T3]
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV
MRQHMINQVVLVGRLTKDPELRYTAEGAAVATVTLAVARNFRNAEGGIDADFVPCVLWRKTAEHTANYCRKGSMVAVTGR
IQTRRYDKKDGQRVYVTEVVAESVQFLHSGKKPEWPEHV
Nucleotide
Download Length: 360 bp
>NTDB_id=37370 GC56T3_RS16710 WP_011232661.1 3375132..3375491(-) (ssbB) [Geobacillus sp. C56-T3]
ATGCGCCAACACATGATCAACCAAGTCGTGTTGGTCGGCCGGTTGACGAAAGATCCCGAGCTTCGCTACACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACGCTGGCGGTGGCGAGAAATTTCCGCAACGCGGAAGGGGGGATTGACGCCGATTTCGTTC
CATGCGTTTTATGGCGGAAAACAGCGGAACATACCGCCAATTATTGCCGAAAAGGATCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCCGGAAAGAAACCAGAATGGCCGGAGCACGTATAG
ATGCGCCAACACATGATCAACCAAGTCGTGTTGGTCGGCCGGTTGACGAAAGATCCCGAGCTTCGCTACACGGCCGAAGG
GGCTGCCGTCGCGACTGTCACGCTGGCGGTGGCGAGAAATTTCCGCAACGCGGAAGGGGGGATTGACGCCGATTTCGTTC
CATGCGTTTTATGGCGGAAAACAGCGGAACATACCGCCAATTATTGCCGAAAAGGATCGATGGTGGCGGTGACGGGGAGA
ATCCAAACGCGCCGCTACGATAAAAAAGACGGTCAACGCGTCTATGTCACCGAAGTCGTCGCGGAGTCCGTCCAATTTCT
CCACTCCGGAAAGAAACCAGAATGGCCGGAGCACGTATAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
67.961 |
86.555 |
0.588 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.385 |
87.395 |
0.571 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60 |
88.235 |
0.529 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
48.571 |
88.235 |
0.429 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
46.667 |
88.235 |
0.412 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
46.667 |
88.235 |
0.412 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
45.714 |
88.235 |
0.403 |
| ssbB/cilA | Streptococcus mitis SK321 |
45.714 |
88.235 |
0.403 |
| ssbA | Streptococcus mutans UA159 |
45.714 |
88.235 |
0.403 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.308 |
87.395 |
0.37 |