Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FNT16_RS03890 Genome accession   NZ_CP041660
Coordinates   995922..997166 (+) Length   414 a.a.
NCBI ID   WP_143870312.1    Uniprot ID   -
Organism   Catenovulum sediminis strain WS1-A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 990922..1002166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FNT16_RS03870 - 991380..991985 (-) 606 WP_143870309.1 molybdenum cofactor guanylyltransferase -
  FNT16_RS03875 moaA 992006..992980 (-) 975 WP_143870310.1 GTP 3',8-cyclase MoaA -
  FNT16_RS20960 - 993467..993985 (+) 519 WP_342779157.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FNT16_RS03885 pilB 994210..995901 (+) 1692 WP_143870311.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FNT16_RS03890 pilC 995922..997166 (+) 1245 WP_143870312.1 type II secretion system F family protein Machinery gene
  FNT16_RS03895 pilD 997166..998104 (+) 939 WP_143870313.1 A24 family peptidase Machinery gene
  FNT16_RS03900 coaE 998104..998709 (+) 606 WP_143870314.1 dephospho-CoA kinase -
  FNT16_RS03905 zapD 998766..999512 (+) 747 WP_143870315.1 cell division protein ZapD -
  FNT16_RS03910 yacG 999506..999727 (+) 222 WP_143870316.1 DNA gyrase inhibitor YacG -
  FNT16_RS03915 ubiA 999906..1000772 (-) 867 WP_143870317.1 4-hydroxybenzoate octaprenyltransferase -
  FNT16_RS03920 - 1000789..1001337 (-) 549 WP_246072461.1 chorismate lyase -
  FNT16_RS03925 - 1001575..1001916 (+) 342 WP_246072462.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44743.75 Da        Isoelectric Point: 10.1491

>NTDB_id=372826 FNT16_RS03890 WP_143870312.1 995922..997166(+) (pilC) [Catenovulum sediminis strain WS1-A]
MAISKKKNKTKVAQQDIFIWQGVNRKGMKTGGELAADSAKAAREQLKHQGVNPTKIKKKPKPLFGNGAKKIVAKDIAVIS
RQLATMLNAGVPLVQSVELIAKGNENANIRHLLNEVGHGIQAGSPLNEVLRQHPKYFDDLYCDLVMAGEQSGALEGVYDR
IATYKEKAEALKSKIKKAMTYPIAVLLIAAIVTVILLVFVVPQFEQIFSSFGAELPAFTQAVIGVSNILQSHGPKLSAAV
IVGVFLFVRAYKNSRKLRDRLDGLLLKLPIFGMILNKASLARFSRTLATTFSAGVPLIEALDSAAGASGNAVYRNAIMTI
KSEVSAGMQMNIAMRNTKLFPDMVIQMVQIGEESGAIDDMLNKVANIYEQEVDDAVDGLSALIEPMIMAILGVVIGGLII
AMYLPIFQLGKIVS

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=372826 FNT16_RS03890 WP_143870312.1 995922..997166(+) (pilC) [Catenovulum sediminis strain WS1-A]
ATGGCAATCTCCAAAAAAAAGAATAAAACCAAAGTTGCCCAACAAGATATTTTTATCTGGCAAGGGGTTAACCGAAAAGG
GATGAAAACCGGTGGGGAGCTGGCAGCTGATAGCGCTAAAGCGGCGCGTGAGCAATTAAAACATCAAGGTGTTAACCCAA
CCAAAATCAAGAAAAAACCCAAGCCATTATTTGGTAATGGTGCTAAAAAAATTGTTGCTAAAGATATTGCGGTTATTTCA
CGTCAGTTGGCAACCATGTTAAATGCGGGTGTTCCTTTAGTGCAATCGGTCGAGTTAATTGCCAAGGGAAATGAAAATGC
CAATATCAGACATTTATTAAATGAGGTTGGGCATGGAATTCAAGCCGGTTCGCCACTGAATGAAGTATTGCGACAACACC
CCAAGTACTTCGACGACTTATATTGCGACTTAGTGATGGCCGGTGAGCAATCTGGTGCACTGGAAGGCGTTTATGACAGA
ATAGCAACCTATAAAGAAAAAGCCGAAGCGCTTAAATCTAAAATCAAAAAAGCGATGACGTATCCAATTGCCGTATTATT
AATCGCAGCAATTGTCACCGTTATTTTATTGGTTTTTGTGGTACCTCAATTTGAACAAATCTTTAGCAGTTTTGGCGCCG
AATTACCCGCATTTACACAGGCCGTCATCGGTGTTTCGAATATACTGCAGTCGCATGGACCTAAACTGTCAGCAGCTGTG
ATTGTTGGTGTTTTTCTATTTGTACGGGCTTACAAAAATTCGAGAAAACTCAGAGACAGGCTGGATGGTTTGTTACTCAA
ACTCCCCATTTTTGGCATGATATTAAATAAAGCGTCACTTGCACGCTTTTCCAGAACCTTGGCAACAACCTTTTCTGCAG
GTGTCCCTTTAATTGAAGCTTTAGATTCAGCTGCTGGTGCATCCGGTAACGCCGTGTATCGCAACGCAATAATGACTATC
AAAAGTGAAGTATCCGCTGGTATGCAAATGAATATAGCCATGCGCAACACAAAATTATTTCCCGACATGGTCATACAAAT
GGTACAAATAGGGGAAGAATCAGGCGCTATTGATGACATGCTGAATAAAGTTGCTAACATCTATGAGCAAGAGGTTGACG
ACGCTGTAGACGGCTTATCAGCCTTAATAGAGCCTATGATTATGGCAATTTTAGGTGTGGTCATTGGCGGCCTCATTATT
GCGATGTATTTACCTATCTTTCAACTGGGGAAAATCGTTAGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(283-405)

Type II secretion system (T2SS), protein F (T2SSF)

(80-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.328

97.343

0.548
  pilC Acinetobacter baumannii D1279779

53.149

95.894

0.51
  pilC Acinetobacter baylyi ADP1

52.764

96.135

0.507
  pilC Legionella pneumophila strain ERS1305867

52.273

95.652

0.5
  pilC Vibrio cholerae strain A1552

45.663

94.686

0.432
  pilG Neisseria meningitidis 44/76-A

44.389

96.86

0.43
  pilC Vibrio campbellii strain DS40M4

43.382

98.551

0.428
  pilG Neisseria gonorrhoeae MS11

43.89

96.86

0.425
  pilC Thermus thermophilus HB27

38.404

96.86

0.372

Multiple sequence alignment