Detailed information NTG0372827

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FNT16_RS03895
• Genome accession: NZ_CP041660
• Coordinates: 997166..998104 (+)
• Length: 312 a.a.
• NCBI ID: WP_143870313.1
• Uniprot ID: -
• Organism: Catenovulum sediminis strain WS1-A
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 992166..1003104

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FNT16_RS20960	-	993467..993985 (+)	519	WP_342779157.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FNT16_RS03885	pilB	994210..995901 (+)	1692	WP_143870311.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FNT16_RS03890	pilC	995922..997166 (+)	1245	WP_143870312.1	type II secretion system F family protein	Machinery gene
FNT16_RS03895	pilD	997166..998104 (+)	939	WP_143870313.1	A24 family peptidase	Machinery gene
FNT16_RS03900	coaE	998104..998709 (+)	606	WP_143870314.1	dephospho-CoA kinase	-
FNT16_RS03905	zapD	998766..999512 (+)	747	WP_143870315.1	cell division protein ZapD	-
FNT16_RS03910	yacG	999506..999727 (+)	222	WP_143870316.1	DNA gyrase inhibitor YacG	-
FNT16_RS03915	ubiA	999906..1000772 (-)	867	WP_143870317.1	4-hydroxybenzoate octaprenyltransferase	-
FNT16_RS03920	-	1000789..1001337 (-)	549	WP_246072461.1	chorismate lyase	-
FNT16_RS03925	-	1001575..1001916 (+)	342	WP_246072462.1	flagellar basal body-associated protein FliL	-
FNT16_RS03930	glpG	1001913..1002758 (-)	846	WP_246072349.1	rhomboid family intramembrane serine protease GlpG	-
FNT16_RS03935	glpE	1002764..1003084 (-)	321	WP_143870320.1	thiosulfate sulfurtransferase GlpE	-

Sequence

Protein

• Length: 312 a.a.
• Molecular weight: 35180.77 Da
• Isoelectric Point: 5.2588

>NTDB_id=372827 FNT16_RS03895 WP_143870313.1 997166..998104(+) (pilD) [Catenovulum sediminis strain WS1-A]
MDISAIINVFEQYPVVWLLSILLFSLLVGSFLNVVIYRLPVMLENAWRSECEILLELPSQRPITDKNAALTQDAQTQCAE
TKHETFNLIIPNSHCQNCKRPIKPWFNIPILGWLMLQGKCANCAQKISARYPLIEALTGALGLVAAWQFGVSSETLWALI
FTYFLICMCFIDFDTMLLPDQLTLPLLWLGLLANLNSTFVALDDAVLGALFGYLSLWLVFQLFKLVTGKEGMGYGDFKLL
AALGAWMGWQSLLVIILISSIVGAVLGIVLLKLRNQDQQQPIPFGPFLVIAGWIAFYWRTDIIDFYLKHWVA

Nucleotide

• Length: 939 bp

>NTDB_id=372827 FNT16_RS03895 WP_143870313.1 997166..998104(+) (pilD) [Catenovulum sediminis strain WS1-A]
ATGGATATTTCAGCAATTATCAATGTATTTGAGCAATACCCTGTCGTTTGGTTATTGAGCATTTTGCTCTTTTCTTTGTT
AGTCGGTAGTTTTTTAAATGTAGTTATTTATCGTCTGCCCGTGATGTTAGAAAATGCATGGCGCAGTGAGTGTGAAATAT
TGTTAGAACTACCGAGTCAACGTCCAATCACAGATAAAAATGCAGCCTTGACACAGGATGCACAGACACAGTGTGCTGAG
ACTAAGCACGAAACTTTTAATTTGATCATCCCTAACTCGCACTGTCAAAATTGTAAACGCCCAATCAAACCTTGGTTTAA
CATCCCCATTTTGGGCTGGTTAATGCTGCAAGGAAAATGCGCTAATTGCGCACAAAAAATATCCGCTCGTTATCCTTTAA
TCGAAGCATTAACAGGTGCTTTAGGCCTGGTCGCCGCTTGGCAATTTGGTGTTAGCAGTGAAACATTATGGGCTTTAATT
TTCACCTACTTTTTAATTTGTATGTGTTTTATCGACTTTGATACCATGTTATTGCCTGATCAATTAACCTTACCCTTGTT
ATGGTTAGGCTTATTAGCCAATTTAAATAGTACGTTTGTTGCGCTGGATGATGCTGTACTGGGTGCGCTTTTTGGCTACC
TATCATTGTGGCTGGTGTTCCAGCTATTTAAACTGGTTACCGGCAAAGAAGGCATGGGCTACGGTGATTTTAAATTGTTG
GCTGCGCTGGGAGCTTGGATGGGCTGGCAATCCTTGTTGGTTATTATTCTAATATCATCGATTGTTGGCGCTGTGTTAGG
TATCGTATTACTCAAATTAAGAAATCAGGATCAACAACAACCGATTCCATTTGGCCCATTTTTGGTGATTGCCGGTTGGA
TTGCTTTTTATTGGCGTACAGACATTATTGATTTTTACCTTAAACATTGGGTTGCCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (23-149)

• Type IV leader peptidase family (Peptidase_A24) (160-268)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.485	99.038	0.5
pilD	Vibrio campbellii strain DS40M4	48.675	96.795	0.471
pilD	Acinetobacter baumannii D1279779	48.344	96.795	0.468
pilD	Acinetobacter nosocomialis M2	48.344	96.795	0.468
pilD	Neisseria gonorrhoeae MS11	49.658	93.59	0.465