Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FLM47_RS13365 Genome accession   NZ_CP041330
Coordinates   2892351..2893574 (+) Length   407 a.a.
NCBI ID   WP_178956619.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. Scap06     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2887351..2898574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLM47_RS13345 (FLM47_13400) ampE 2888401..2889252 (-) 852 WP_138609465.1 beta-lactamase regulator AmpE -
  FLM47_RS13350 (FLM47_13410) ampD 2889540..2890085 (-) 546 WP_178956616.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FLM47_RS13355 (FLM47_13415) nadC 2890464..2891309 (+) 846 WP_178956617.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FLM47_RS13360 (FLM47_13420) pilA2 2891846..2892286 (+) 441 WP_178956618.1 pilin Machinery gene
  FLM47_RS13365 (FLM47_13425) pilC 2892351..2893574 (+) 1224 WP_178956619.1 type II secretion system F family protein Machinery gene
  FLM47_RS13370 (FLM47_13430) pilD 2893762..2894673 (+) 912 WP_178956620.1 A24 family peptidase Machinery gene
  FLM47_RS13375 (FLM47_13435) coaE 2894676..2895305 (+) 630 WP_178956621.1 dephospho-CoA kinase -
  FLM47_RS13380 (FLM47_13440) pilB 2895441..2897117 (+) 1677 WP_178956622.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FLM47_RS13385 (FLM47_13445) yacG 2897183..2897413 (+) 231 WP_054202591.1 DNA gyrase inhibitor YacG -
  FLM47_RS13390 (FLM47_13450) - 2897473..2897961 (-) 489 WP_138605552.1 periplasmic heavy metal sensor -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44209.21 Da        Isoelectric Point: 9.7962

>NTDB_id=371253 FLM47_RS13365 WP_178956619.1 2892351..2893574(+) (pilC) [Pseudoalteromonas sp. Scap06]
MKKEPNQKDTFQWIGVSARGKKLEGELIGSSIALVKAQLRKQGITPSKVKRKAKPLFGLQSVQKITPKDIALVTRQIATM
LMAGVPLIQSIEMIGSGSTNKSVSKLMETIGDEVKAGQPLSMALRKHPRYFDDLYCDLVASGEQSGSLDKIFDRVALYKE
KSEALKSKIRKAMFYPIAVLVVALIVTSILLIFVVPQFQDIFAGFGAELPAFTLFVIGISEFMQTNWWIALIAVVAFGYL
FKEAHLRSLKLRDATDRAILKLPVVGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILEIKAEVSS
GNQMNWAMRNSKIFPDMVVQMVAIGEESGSLDGMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIVAMYLPI
FQLGSVI

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=371253 FLM47_RS13365 WP_178956619.1 2892351..2893574(+) (pilC) [Pseudoalteromonas sp. Scap06]
ATGAAAAAAGAGCCAAACCAAAAAGATACTTTTCAATGGATCGGGGTTAGTGCTCGAGGAAAAAAGCTTGAGGGAGAACT
AATTGGTTCTAGTATTGCTTTGGTCAAAGCCCAGTTACGCAAACAAGGCATTACCCCCTCAAAAGTAAAACGCAAAGCCA
AACCCTTGTTTGGTTTGCAAAGTGTGCAAAAAATCACCCCAAAAGACATTGCTTTAGTTACTCGGCAAATAGCTACCATG
CTGATGGCGGGTGTACCACTGATTCAATCAATTGAGATGATAGGCTCAGGTTCTACCAATAAAAGCGTGAGTAAACTCAT
GGAAACAATTGGTGATGAGGTTAAAGCAGGGCAACCATTATCAATGGCACTCAGAAAGCATCCCCGTTATTTTGATGATT
TATATTGCGATTTAGTAGCATCAGGTGAGCAATCGGGCTCTTTGGATAAAATATTTGACCGCGTAGCCCTTTATAAAGAA
AAATCAGAAGCGCTTAAATCAAAAATTAGAAAAGCCATGTTTTACCCTATTGCGGTATTGGTGGTGGCGTTGATTGTAAC
CTCCATATTACTTATTTTTGTAGTACCACAATTTCAAGATATTTTCGCTGGCTTTGGTGCTGAACTGCCTGCCTTTACCT
TATTTGTGATTGGTATATCAGAATTTATGCAAACAAACTGGTGGATAGCGCTCATTGCAGTTGTTGCCTTTGGTTATCTA
TTTAAAGAAGCCCATTTAAGAAGCTTAAAGTTGCGTGATGCCACCGATCGCGCCATACTGAAGCTTCCGGTTGTCGGCAT
GATTTTAAATAAAGCGGCCGTGGCACGTTATGCGCGGACTTTATCGACCACTTTTGCTGCGGGTGTACCATTGGTGGATG
CTTTGGATTCTGCAGCCGGTGCCTCAGGTAATGCGGTTTACCGTTATGCTATTTTAGAAATAAAAGCCGAGGTAAGTTCA
GGTAATCAAATGAACTGGGCGATGCGAAATTCAAAAATATTCCCCGATATGGTAGTGCAAATGGTCGCCATTGGTGAAGA
ATCAGGTTCGCTTGATGGCATGCTGGCTAAAGTTGCCACTATCTACGAGCAAGAAGTAGATGACGCGGTAGATGGTCTAT
CGAGCTTACTTGAGCCGTTAATAATGGCAGTGCTCGGCGTATTAGTGGGTGGCTTAATTGTGGCCATGTACTTACCTATA
TTCCAACTAGGTTCAGTTATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

63.145

100

0.631
  pilC Legionella pneumophila strain ERS1305867

55.528

97.789

0.543
  pilC Acinetobacter baylyi ADP1

55.416

97.543

0.541
  pilC Acinetobacter baumannii D1279779

55.025

97.789

0.538
  pilC Vibrio cholerae strain A1552

44.75

98.28

0.44
  pilC Vibrio campbellii strain DS40M4

42.822

100

0.432
  pilG Neisseria meningitidis 44/76-A

43.734

96.069

0.42
  pilG Neisseria gonorrhoeae MS11

43.478

96.069

0.418
  pilC Thermus thermophilus HB27

36.908

98.526

0.364

Multiple sequence alignment