Detailed information
Bioinformatically predicted
Overview
| Name | pilA2 | Type | Machinery gene |
| Locus tag | FLM47_RS13360 | Genome accession | NZ_CP041330 |
| Coordinates | 2891846..2892286 (+) | Length | 146 a.a. |
| NCBI ID | WP_178956618.1 | Uniprot ID | - |
| Organism | Pseudoalteromonas sp. Scap06 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2886846..2897286
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FLM47_RS13345 (FLM47_13400) | ampE | 2888401..2889252 (-) | 852 | WP_138609465.1 | beta-lactamase regulator AmpE | - |
| FLM47_RS13350 (FLM47_13410) | ampD | 2889540..2890085 (-) | 546 | WP_178956616.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FLM47_RS13355 (FLM47_13415) | nadC | 2890464..2891309 (+) | 846 | WP_178956617.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FLM47_RS13360 (FLM47_13420) | pilA2 | 2891846..2892286 (+) | 441 | WP_178956618.1 | pilin | Machinery gene |
| FLM47_RS13365 (FLM47_13425) | pilC | 2892351..2893574 (+) | 1224 | WP_178956619.1 | type II secretion system F family protein | Machinery gene |
| FLM47_RS13370 (FLM47_13430) | pilD | 2893762..2894673 (+) | 912 | WP_178956620.1 | A24 family peptidase | Machinery gene |
| FLM47_RS13375 (FLM47_13435) | coaE | 2894676..2895305 (+) | 630 | WP_178956621.1 | dephospho-CoA kinase | - |
| FLM47_RS13380 (FLM47_13440) | pilB | 2895441..2897117 (+) | 1677 | WP_178956622.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
Sequence
Protein
Download Length: 146 a.a. Molecular weight: 14943.95 Da Isoelectric Point: 6.1574
>NTDB_id=371252 FLM47_RS13360 WP_178956618.1 2891846..2892286(+) (pilA2) [Pseudoalteromonas sp. Scap06]
MQTMTQQNQKGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVTDGLSLASAAKTAVAENSMNGNALDQGWTAPTATDN
VTSVAIAGATGYVTITYTARAGGGTIILRPQAGGADLTSGTVPANSLSWDCTTGTLAAAYRPSSCR
MQTMTQQNQKGFTLIELMIVVAIIGILAAVALPAYQDYTIRARVTDGLSLASAAKTAVAENSMNGNALDQGWTAPTATDN
VTSVAIAGATGYVTITYTARAGGGTIILRPQAGGADLTSGTVPANSLSWDCTTGTLAAAYRPSSCR
Nucleotide
Download Length: 441 bp
>NTDB_id=371252 FLM47_RS13360 WP_178956618.1 2891846..2892286(+) (pilA2) [Pseudoalteromonas sp. Scap06]
ATGCAAACAATGACACAACAAAACCAAAAGGGTTTCACCCTAATTGAATTAATGATTGTAGTAGCAATCATCGGTATTTT
AGCAGCAGTTGCACTACCTGCTTATCAAGACTATACCATCAGAGCACGTGTAACTGATGGATTGTCATTGGCTTCAGCAG
CTAAGACAGCTGTTGCTGAAAATTCTATGAATGGAAATGCATTAGATCAAGGTTGGACAGCACCAACAGCAACAGATAAT
GTTACAAGCGTAGCAATCGCAGGCGCAACAGGTTATGTAACAATAACATACACAGCTAGAGCAGGCGGCGGTACAATTAT
ATTGAGACCGCAAGCTGGTGGTGCAGATTTAACAAGTGGAACTGTTCCTGCAAACTCTTTAAGTTGGGACTGTACTACAG
GTACTTTAGCTGCGGCCTATAGACCATCAAGCTGTAGATAG
ATGCAAACAATGACACAACAAAACCAAAAGGGTTTCACCCTAATTGAATTAATGATTGTAGTAGCAATCATCGGTATTTT
AGCAGCAGTTGCACTACCTGCTTATCAAGACTATACCATCAGAGCACGTGTAACTGATGGATTGTCATTGGCTTCAGCAG
CTAAGACAGCTGTTGCTGAAAATTCTATGAATGGAAATGCATTAGATCAAGGTTGGACAGCACCAACAGCAACAGATAAT
GTTACAAGCGTAGCAATCGCAGGCGCAACAGGTTATGTAACAATAACATACACAGCTAGAGCAGGCGGCGGTACAATTAT
ATTGAGACCGCAAGCTGGTGGTGCAGATTTAACAAGTGGAACTGTTCCTGCAAACTCTTTAAGTTGGGACTGTACTACAG
GTACTTTAGCTGCGGCCTATAGACCATCAAGCTGTAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA2 | Legionella pneumophila strain ERS1305867 |
61.806 |
98.63 |
0.61 |
| pilA2 | Legionella pneumophila str. Paris |
60.69 |
99.315 |
0.603 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
48.485 |
100 |
0.548 |
| comP | Acinetobacter baylyi ADP1 |
47.222 |
98.63 |
0.466 |
| pilA | Acinetobacter baumannii strain A118 |
42.029 |
94.521 |
0.397 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.041 |
100 |
0.39 |
| pilA | Pseudomonas aeruginosa PAK |
34.591 |
100 |
0.377 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
38.194 |
98.63 |
0.377 |