Detailed information NTG0371254

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FLM47_RS13370
• Genome accession: NZ_CP041330
• Coordinates: 2893762..2894673 (+)
• Length: 303 a.a.
• NCBI ID: WP_178956620.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. Scap06
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2888762..2899673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FLM47_RS13350 (FLM47_13410)	ampD	2889540..2890085 (-)	546	WP_178956616.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
FLM47_RS13355 (FLM47_13415)	nadC	2890464..2891309 (+)	846	WP_178956617.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FLM47_RS13360 (FLM47_13420)	pilA2	2891846..2892286 (+)	441	WP_178956618.1	pilin	Machinery gene
FLM47_RS13365 (FLM47_13425)	pilC	2892351..2893574 (+)	1224	WP_178956619.1	type II secretion system F family protein	Machinery gene
FLM47_RS13370 (FLM47_13430)	pilD	2893762..2894673 (+)	912	WP_178956620.1	A24 family peptidase	Machinery gene
FLM47_RS13375 (FLM47_13435)	coaE	2894676..2895305 (+)	630	WP_178956621.1	dephospho-CoA kinase	-
FLM47_RS13380 (FLM47_13440)	pilB	2895441..2897117 (+)	1677	WP_178956622.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FLM47_RS13385 (FLM47_13445)	yacG	2897183..2897413 (+)	231	WP_054202591.1	DNA gyrase inhibitor YacG	-
FLM47_RS13390 (FLM47_13450)	-	2897473..2897961 (-)	489	WP_138605552.1	periplasmic heavy metal sensor	-
FLM47_RS13395 (FLM47_13455)	-	2898128..2898817 (+)	690	WP_178956623.1	response regulator	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 33554.93 Da
• Isoelectric Point: 7.4704

>NTDB_id=371254 FLM47_RS13370 WP_178956620.1 2893762..2894673(+) (pilD) [Pseudoalteromonas sp. Scap06]
MQSFFIDITATMQNHLWFYLTTIGLVSLCIGSFLNVVIYRLPLMMQKEWQTECRLLLADELTSPKAKQTTEQTTNTFNLV
KPNSCCPKCKAAIKPWQNIPIISWLFLKGKCATCDNPISIRYPIVEAITAILSLVVAYTFGATEQALLYIVVTWALVALT
FIDIDHMLLPDQLTLPLLWLALIASVMGYTIAPSDAIIGAACGYLSLWSVFWLFKLITGKEGMGYGDFKLLAVFGALLGW
QSLLTIILLSSVVGAVIGIALLSIQGKDKATPIPFGPYLAIAGWITMLWGTQLQNSYFNFIGY

Nucleotide

• Length: 912 bp

>NTDB_id=371254 FLM47_RS13370 WP_178956620.1 2893762..2894673(+) (pilD) [Pseudoalteromonas sp. Scap06]
ATGCAAAGTTTTTTTATTGATATCACCGCCACGATGCAAAACCATTTATGGTTTTACTTAACCACGATTGGCCTAGTGAG
TTTATGTATTGGTAGCTTTTTAAATGTGGTGATTTATCGCTTGCCGCTAATGATGCAAAAAGAATGGCAAACTGAATGCC
GCTTATTATTAGCCGATGAACTAACCAGCCCAAAGGCTAAACAGACCACTGAACAAACGACTAACACGTTTAACTTAGTT
AAACCCAATTCATGTTGCCCAAAGTGCAAAGCGGCGATTAAACCGTGGCAAAATATCCCCATTATTAGTTGGTTATTTTT
AAAAGGTAAATGCGCAACCTGTGATAACCCAATTTCAATTCGTTACCCAATCGTTGAAGCCATTACCGCTATTTTAAGCC
TAGTTGTTGCTTACACTTTTGGCGCAACTGAGCAGGCTTTATTGTACATTGTAGTGACTTGGGCATTGGTAGCACTGACT
TTTATTGATATTGATCACATGCTACTGCCAGATCAGCTTACTTTGCCGCTTTTATGGCTAGCATTAATCGCATCAGTTAT
GGGTTATACCATAGCCCCTAGCGATGCTATTATTGGTGCAGCATGTGGTTATTTAAGCTTGTGGAGTGTGTTTTGGCTGT
TTAAGCTAATTACTGGCAAAGAAGGTATGGGTTATGGCGACTTTAAATTACTGGCTGTATTTGGCGCACTGCTAGGTTGG
CAATCGTTATTGACCATTATTTTACTCTCAAGCGTGGTAGGCGCAGTAATAGGCATTGCCCTGCTGAGTATTCAAGGTAA
AGACAAAGCAACGCCTATTCCTTTTGGTCCTTATTTAGCAATAGCCGGTTGGATAACTATGCTGTGGGGTACACAACTAC
AAAACAGCTATTTTAATTTTATTGGTTACTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (26-140)

• Type IV leader peptidase family (Peptidase_A24) (151-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	51.195	96.7	0.495
pilD	Acinetobacter nosocomialis M2	51.195	96.7	0.495
pilD	Vibrio cholerae strain A1552	51.22	94.719	0.485
pilD	Vibrio campbellii strain DS40M4	49.658	96.37	0.479
pilD	Neisseria gonorrhoeae MS11	45.149	88.449	0.399