Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   FIV34_RS06050 Genome accession   NZ_CP041046
Coordinates   1325180..1325611 (-) Length   143 a.a.
NCBI ID   WP_139980656.1    Uniprot ID   A0A4Y5Z2Z1
Organism   Luteibacter pinisoli strain MAH-14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1316892..1341241 1325180..1325611 within 0


Gene organization within MGE regions


Location: 1316892..1341241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIV34_RS06020 (FIV34_06020) - 1316892..1317938 (+) 1047 WP_139980646.1 class I SAM-dependent methyltransferase -
  FIV34_RS06025 (FIV34_06025) - 1317935..1319011 (+) 1077 WP_139980648.1 class I SAM-dependent methyltransferase -
  FIV34_RS06030 (FIV34_06030) - 1319004..1319894 (+) 891 WP_170207523.1 glycosyltransferase -
  FIV34_RS06035 (FIV34_06035) - 1319865..1321142 (-) 1278 WP_139980652.1 lipopolysaccharide biosynthesis protein -
  FIV34_RS06040 (FIV34_06040) - 1321147..1323024 (-) 1878 WP_139985736.1 hypothetical protein -
  FIV34_RS06045 (FIV34_06045) - 1323131..1325035 (-) 1905 WP_139980654.1 tetratricopeptide repeat protein -
  FIV34_RS06050 (FIV34_06050) pilE 1325180..1325611 (-) 432 WP_139980656.1 pilin Machinery gene
  FIV34_RS06055 (FIV34_06055) - 1325920..1326363 (-) 444 WP_139980658.1 pilin -
  FIV34_RS06060 (FIV34_06060) - 1326460..1327848 (-) 1389 WP_139980661.1 hypothetical protein -
  FIV34_RS06065 (FIV34_06065) - 1327838..1329262 (-) 1425 WP_139980662.1 hypothetical protein -
  FIV34_RS06070 (FIV34_06070) - 1329300..1330670 (-) 1371 WP_139980663.1 hypothetical protein -
  FIV34_RS06075 (FIV34_06075) - 1330894..1332990 (+) 2097 WP_139980665.1 S9 family peptidase -
  FIV34_RS06080 (FIV34_06080) - 1333037..1334338 (-) 1302 WP_139980667.1 glycosyltransferase family 39 protein -
  FIV34_RS06085 (FIV34_06085) - 1334587..1335573 (+) 987 WP_139980670.1 glycosyltransferase family 2 protein -
  FIV34_RS06090 (FIV34_06090) - 1335570..1335911 (+) 342 WP_139980672.1 EamA family transporter -
  FIV34_RS06095 (FIV34_06095) - 1335959..1337716 (+) 1758 WP_170207524.1 DUF2142 domain-containing protein -
  FIV34_RS06100 (FIV34_06100) - 1337745..1338134 (+) 390 WP_170207525.1 DUF2750 domain-containing protein -
  FIV34_RS06110 (FIV34_06110) - 1338708..1339223 (+) 516 WP_139980680.1 hypothetical protein -
  FIV34_RS06115 (FIV34_06115) - 1339310..1339801 (+) 492 WP_139980682.1 hypothetical protein -
  FIV34_RS06120 (FIV34_06120) - 1339867..1340763 (-) 897 WP_139980684.1 AraC family transcriptional regulator -
  FIV34_RS06125 (FIV34_06125) - 1340864..1341241 (-) 378 WP_139980686.1 hypothetical protein -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 14815.97 Da        Isoelectric Point: 9.3651

>NTDB_id=369160 FIV34_RS06050 WP_139980656.1 1325180..1325611(-) (pilE) [Luteibacter pinisoli strain MAH-14]
MKNVQKGFTLIELMIVVAIIAILAAIAIPQYQNYIIRTQVSEGMNLADGAKTAVAEYYNNKGGWPSTNASAGLAAGTGSI
SGKYVTGVTTTGGKITAVFGNESNTKISSDVLVLSAYDKGGSIAWSCKNGTTISPAFLPTSCR

Nucleotide


Download         Length: 432 bp        

>NTDB_id=369160 FIV34_RS06050 WP_139980656.1 1325180..1325611(-) (pilE) [Luteibacter pinisoli strain MAH-14]
ATGAAGAACGTCCAGAAGGGCTTCACGCTCATCGAACTGATGATCGTGGTCGCCATCATCGCGATCCTGGCTGCTATCGC
CATCCCGCAGTACCAGAACTACATCATCCGCACCCAGGTGTCGGAAGGCATGAACCTGGCTGACGGCGCCAAGACGGCCG
TGGCTGAGTACTACAACAACAAGGGTGGCTGGCCGTCCACGAACGCCTCGGCAGGCCTCGCTGCAGGCACCGGCTCGATC
TCCGGCAAGTACGTGACGGGCGTCACGACGACCGGCGGCAAGATCACGGCCGTATTCGGCAACGAATCCAACACGAAGAT
CTCCAGCGACGTGCTCGTGCTGTCGGCCTACGACAAGGGCGGCTCGATCGCGTGGAGCTGCAAGAACGGCACGACGATCT
CGCCGGCCTTCCTGCCGACCTCCTGCCGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)

Pilin (bacterial filament) (Pilin)

(37-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y5Z2Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

45.283

100

0.503
  pilE Neisseria gonorrhoeae MS11

44.654

100

0.497
  pilA Acinetobacter baumannii strain A118

44.138

100

0.448
  pilA Ralstonia pseudosolanacearum GMI1000

38.554

100

0.448
  pilA/pilA1 Eikenella corrodens VA1

38.71

100

0.42
  comP Acinetobacter baylyi ADP1

40.816

100

0.42
  pilA2 Legionella pneumophila strain ERS1305867

40.69

100

0.413
  pilA2 Legionella pneumophila str. Paris

41.135

98.601

0.406
  pilA Vibrio cholerae C6706

38.514

100

0.399
  pilA Vibrio cholerae strain A1552

38.514

100

0.399
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

38.514

100

0.399

Multiple sequence alignment