Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | FIU13_RS09890 | Genome accession | NZ_CP040997 |
| Coordinates | 1889682..1890074 (+) | Length | 130 a.a. |
| NCBI ID | WP_029713971.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain FDAARGOS_774 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1878728..1914856 | 1889682..1890074 | within | 0 |
Gene organization within MGE regions
Location: 1878728..1914856
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIU13_RS09795 (FIU13_09795) | - | 1878728..1879924 (-) | 1197 | WP_029713988.1 | tyrosine-type recombinase/integrase | - |
| FIU13_RS09800 (FIU13_09800) | - | 1880320..1881075 (-) | 756 | WP_029713987.1 | helix-turn-helix domain-containing protein | - |
| FIU13_RS10205 | - | 1881234..1881380 (+) | 147 | WP_022554802.1 | hypothetical protein | - |
| FIU13_RS09805 (FIU13_09805) | - | 1881555..1882136 (+) | 582 | WP_029713986.1 | hypothetical protein | - |
| FIU13_RS09810 (FIU13_09810) | - | 1882375..1882602 (+) | 228 | WP_029713985.1 | hypothetical protein | - |
| FIU13_RS09815 (FIU13_09815) | - | 1882645..1883364 (+) | 720 | WP_029713984.1 | ORF6C domain-containing protein | - |
| FIU13_RS09820 (FIU13_09820) | - | 1883439..1883651 (+) | 213 | WP_029713983.1 | hypothetical protein | - |
| FIU13_RS09825 (FIU13_09825) | - | 1883648..1883854 (-) | 207 | WP_029713982.1 | hypothetical protein | - |
| FIU13_RS10355 (FIU13_09830) | - | 1883937..1884038 (+) | 102 | Protein_1845 | XRE family transcriptional regulator | - |
| FIU13_RS09835 (FIU13_09835) | - | 1884111..1884368 (+) | 258 | WP_022554795.1 | hypothetical protein | - |
| FIU13_RS09840 (FIU13_09840) | - | 1884523..1884711 (+) | 189 | WP_029713981.1 | hypothetical protein | - |
| FIU13_RS09845 (FIU13_09845) | dnaB | 1884698..1886044 (+) | 1347 | WP_029713980.1 | replicative DNA helicase | - |
| FIU13_RS09850 (FIU13_09850) | - | 1886031..1886777 (+) | 747 | WP_029713979.1 | conserved phage C-terminal domain-containing protein | - |
| FIU13_RS09855 (FIU13_09855) | - | 1886778..1887599 (+) | 822 | WP_029713978.1 | ATP-binding protein | - |
| FIU13_RS09860 (FIU13_09860) | - | 1887599..1887829 (+) | 231 | WP_029713977.1 | hypothetical protein | - |
| FIU13_RS10055 | - | 1887840..1888004 (+) | 165 | WP_153276856.1 | hypothetical protein | - |
| FIU13_RS09865 (FIU13_09865) | - | 1887991..1888482 (+) | 492 | WP_093974717.1 | MazG-like family protein | - |
| FIU13_RS09870 (FIU13_09870) | - | 1888479..1888784 (+) | 306 | WP_093974715.1 | DUF1372 family protein | - |
| FIU13_RS09875 (FIU13_09875) | - | 1888907..1889146 (+) | 240 | WP_029713973.1 | DUF3310 domain-containing protein | - |
| FIU13_RS09880 (FIU13_09880) | - | 1889139..1889471 (+) | 333 | WP_029713972.1 | hypothetical protein | - |
| FIU13_RS09885 (FIU13_09885) | - | 1889464..1889685 (+) | 222 | WP_003057301.1 | hypothetical protein | - |
| FIU13_RS09890 (FIU13_09890) | ssbA | 1889682..1890074 (+) | 393 | WP_029713971.1 | single-stranded DNA-binding protein | Machinery gene |
| FIU13_RS09895 (FIU13_09895) | - | 1890088..1890366 (+) | 279 | WP_029713970.1 | hypothetical protein | - |
| FIU13_RS09900 (FIU13_09900) | - | 1890363..1890707 (+) | 345 | WP_029713969.1 | helix-turn-helix domain-containing protein | - |
| FIU13_RS09905 (FIU13_09905) | - | 1890710..1891111 (+) | 402 | WP_027970299.1 | hypothetical protein | - |
| FIU13_RS09910 (FIU13_09910) | - | 1891269..1891844 (+) | 576 | WP_029713968.1 | site-specific integrase | - |
| FIU13_RS09915 (FIU13_09915) | - | 1891999..1892295 (+) | 297 | WP_029713967.1 | hypothetical protein | - |
| FIU13_RS09920 (FIU13_09920) | - | 1892319..1892564 (+) | 246 | WP_029713966.1 | hypothetical protein | - |
| FIU13_RS09930 (FIU13_09930) | - | 1892806..1893192 (+) | 387 | WP_029713964.1 | hypothetical protein | - |
| FIU13_RS09935 (FIU13_09935) | - | 1893185..1893490 (+) | 306 | WP_029713963.1 | HNH endonuclease | - |
| FIU13_RS09940 (FIU13_09940) | - | 1893633..1893950 (+) | 318 | WP_029713962.1 | P27 family phage terminase small subunit | - |
| FIU13_RS09945 (FIU13_09945) | - | 1893963..1895693 (+) | 1731 | WP_029713961.1 | terminase large subunit domain-containing protein | - |
| FIU13_RS09950 (FIU13_09950) | - | 1895874..1897061 (+) | 1188 | WP_027970293.1 | phage portal protein | - |
| FIU13_RS09955 (FIU13_09955) | - | 1897042..1897848 (+) | 807 | WP_029713960.1 | head maturation protease, ClpP-related | - |
| FIU13_RS09960 (FIU13_09960) | - | 1897865..1898998 (+) | 1134 | WP_029713959.1 | phage major capsid protein | - |
| FIU13_RS10210 | - | 1899009..1899182 (+) | 174 | WP_164875336.1 | hypothetical protein | - |
| FIU13_RS09965 (FIU13_09965) | - | 1899182..1899490 (+) | 309 | WP_029713958.1 | hypothetical protein | - |
| FIU13_RS09970 (FIU13_09970) | - | 1899483..1899845 (+) | 363 | WP_029713957.1 | hypothetical protein | - |
| FIU13_RS09975 (FIU13_09975) | - | 1899847..1900245 (+) | 399 | WP_011017387.1 | HK97 gp10 family phage protein | - |
| FIU13_RS09980 (FIU13_09980) | - | 1900238..1900618 (+) | 381 | WP_029713956.1 | hypothetical protein | - |
| FIU13_RS09985 (FIU13_09985) | - | 1900630..1901214 (+) | 585 | WP_029713955.1 | major tail protein | - |
| FIU13_RS09990 (FIU13_09990) | gpG | 1901310..1901612 (+) | 303 | WP_029713954.1 | phage tail assembly chaperone G | - |
| FIU13_RS09995 (FIU13_09995) | - | 1901837..1905937 (+) | 4101 | WP_029713952.1 | phage tail tape measure protein | - |
| FIU13_RS10000 (FIU13_10000) | - | 1905950..1906720 (+) | 771 | WP_029713951.1 | distal tail protein Dit | - |
| FIU13_RS10005 (FIU13_10005) | - | 1906717..1908768 (+) | 2052 | WP_029713950.1 | phage tail spike protein | - |
| FIU13_RS10010 (FIU13_10010) | - | 1908765..1909772 (+) | 1008 | WP_011017394.1 | hyaluronoglucosaminidase | - |
| FIU13_RS10015 (FIU13_10015) | - | 1909782..1911686 (+) | 1905 | WP_011017395.1 | gp58-like family protein | - |
| FIU13_RS10020 (FIU13_10020) | - | 1911698..1912126 (+) | 429 | WP_002988448.1 | DUF1617 family protein | - |
| FIU13_RS10025 (FIU13_10025) | - | 1912129..1912767 (+) | 639 | WP_046735270.1 | hypothetical protein | - |
| FIU13_RS10030 (FIU13_10030) | - | 1912779..1913051 (+) | 273 | WP_011017397.1 | hypothetical protein | - |
| FIU13_RS10035 (FIU13_10035) | - | 1913048..1913275 (+) | 228 | WP_029714020.1 | phage holin | - |
| FIU13_RS10040 (FIU13_10040) | - | 1913398..1914603 (+) | 1206 | WP_029714018.1 | glucosaminidase domain-containing protein | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 14865.79 Da Isoelectric Point: 6.9512
>NTDB_id=368635 FIU13_RS09890 WP_029713971.1 1889682..1890074(+) (ssbA) [Streptococcus pyogenes strain FDAARGOS_774]
MINNVVLIGRLTKDVELRYTPSQVACAQFTLAVNRNFKNQDGQKEADFINCVMWRQAAENLTNWTKKGHLIAITGRIQTR
NYENQQGQRVYVTEVVAESFQILEKRDKTANTNSLADTMPDYGPEPDLPF
MINNVVLIGRLTKDVELRYTPSQVACAQFTLAVNRNFKNQDGQKEADFINCVMWRQAAENLTNWTKKGHLIAITGRIQTR
NYENQQGQRVYVTEVVAESFQILEKRDKTANTNSLADTMPDYGPEPDLPF
Nucleotide
Download Length: 393 bp
>NTDB_id=368635 FIU13_RS09890 WP_029713971.1 1889682..1890074(+) (ssbA) [Streptococcus pyogenes strain FDAARGOS_774]
ATGATCAATAACGTTGTCCTGATTGGCCGCTTAACAAAAGATGTTGAGCTACGCTATACACCAAGTCAAGTAGCTTGCGC
ACAGTTTACTTTAGCAGTTAATCGTAATTTTAAAAATCAAGATGGGCAAAAAGAAGCTGATTTTATTAATTGTGTAATGT
GGCGACAAGCTGCTGAAAATTTAACAAATTGGACGAAAAAGGGCCATCTGATTGCGATAACAGGACGCATTCAGACCCGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTGGTTGCCGAAAGTTTTCAAATTTTAGAGAAGCGTGA
TAAAACAGCTAATACTAATAGCTTGGCAGATACCATGCCAGACTATGGACCAGAACCAGATTTACCATTTTAG
ATGATCAATAACGTTGTCCTGATTGGCCGCTTAACAAAAGATGTTGAGCTACGCTATACACCAAGTCAAGTAGCTTGCGC
ACAGTTTACTTTAGCAGTTAATCGTAATTTTAAAAATCAAGATGGGCAAAAAGAAGCTGATTTTATTAATTGTGTAATGT
GGCGACAAGCTGCTGAAAATTTAACAAATTGGACGAAAAAGGGCCATCTGATTGCGATAACAGGACGCATTCAGACCCGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTGGTTGCCGAAAGTTTTCAAATTTTAGAGAAGCGTGA
TAAAACAGCTAATACTAATAGCTTGGCAGATACCATGCCAGACTATGGACCAGAACCAGATTTACCATTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
68.224 |
82.308 |
0.562 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
65.138 |
83.846 |
0.546 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
46.97 |
100 |
0.477 |
| ssbA | Streptococcus mutans UA159 |
44.444 |
100 |
0.462 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
52.212 |
86.923 |
0.454 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.939 |
100 |
0.446 |
| ssbB/cilA | Streptococcus mitis SK321 |
43.182 |
100 |
0.438 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.182 |
100 |
0.438 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
43.182 |
100 |
0.438 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
43.182 |
100 |
0.438 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
43.182 |
100 |
0.438 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
41.085 |
99.231 |
0.408 |