Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GZH78_RS26645 | Genome accession | NZ_CP048408 |
| Coordinates | 5926189..5926707 (-) | Length | 172 a.a. |
| NCBI ID | WP_007966163.1 | Uniprot ID | A0A345RWR5 |
| Organism | Pseudomonas fluorescens strain DR397 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5921189..5931707
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZH78_RS26615 (GZH78_26625) | - | 5921644..5922312 (+) | 669 | WP_039771966.1 | YjfI family protein | - |
| GZH78_RS26620 (GZH78_26630) | - | 5922330..5923028 (+) | 699 | WP_064382239.1 | PspA/IM30 family protein | - |
| GZH78_RS26625 (GZH78_26635) | - | 5923153..5923803 (+) | 651 | WP_103385519.1 | DUF2491 family protein | - |
| GZH78_RS26630 (GZH78_26640) | - | 5923817..5924242 (+) | 426 | WP_074691674.1 | DUF350 domain-containing protein | - |
| GZH78_RS26635 (GZH78_26645) | - | 5924260..5924952 (+) | 693 | WP_163976601.1 | DUF1190 domain-containing protein | - |
| GZH78_RS26640 (GZH78_26650) | - | 5924955..5926112 (+) | 1158 | WP_163976603.1 | glutathionylspermidine synthase family protein | - |
| GZH78_RS26645 (GZH78_26655) | ssb | 5926189..5926707 (-) | 519 | WP_007966163.1 | single-stranded DNA-binding protein | Machinery gene |
| GZH78_RS26650 (GZH78_26660) | - | 5926717..5928114 (-) | 1398 | WP_039771979.1 | MFS transporter | - |
| GZH78_RS26655 (GZH78_26665) | uvrA | 5928306..5931140 (+) | 2835 | WP_115079381.1 | excinuclease ABC subunit UvrA | Machinery gene |
| GZH78_RS26660 (GZH78_26670) | bfr | 5931206..5931673 (-) | 468 | WP_064382244.1 | bacterioferritin | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 19125.28 Da Isoelectric Point: 5.9314
>NTDB_id=368635 GZH78_RS26645 WP_007966163.1 5926189..5926707(-) (ssb) [Pseudomonas fluorescens strain DR397]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRPAPAPQQAAPQPA
PDFDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIVVDMQGTMQLLGGRPQQGDQQGGGNNYQQQAPRQQAPRPQQSAPQQRPAPAPQQAAPQPA
PDFDSFDDDIPF
Nucleotide
Download Length: 519 bp
>NTDB_id=368635 GZH78_RS26645 WP_007966163.1 5926189..5926707(-) (ssb) [Pseudomonas fluorescens strain DR397]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGCCAGGATCCCGAAGTACGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGCGTATCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAGATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCGCAACAGGGCGACCAACAAGGCGGTGGCAACAACTATCAGCAGCAGGCGCCACGCC
AGCAGGCTCCGCGTCCGCAGCAGTCGGCACCTCAGCAGCGTCCGGCCCCGGCTCCACAGCAGGCCGCACCGCAACCGGCT
CCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTACTTGCGGCCAGGATCCCGAAGTACGCTACCTGCCCAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCGACCAGCGAGCAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAGT
GGCACCGCGTATCGATGTTCGGCAAGGTTGCCGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGTGAGTGGGAAAAAGACGGTATCAAGCGTTACACCACCGAGATCGTGGTCGACATGCAAGGCAC
CATGCAACTGCTCGGCGGCCGTCCGCAACAGGGCGACCAACAAGGCGGTGGCAACAACTATCAGCAGCAGGCGCCACGCC
AGCAGGCTCCGCGTCCGCAGCAGTCGGCACCTCAGCAGCGTCCGGCCCCGGCTCCACAGCAGGCCGCACCGCAACCGGCT
CCGGATTTCGACAGCTTCGATGACGATATTCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
57.923 |
100 |
0.616 |
| ssb | Glaesserella parasuis strain SC1401 |
49.451 |
100 |
0.523 |
| ssb | Neisseria meningitidis MC58 |
47.514 |
100 |
0.5 |
| ssb | Neisseria gonorrhoeae MS11 |
47.514 |
100 |
0.5 |