Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   FIU13_RS06125 Genome accession   NZ_CP040997
Coordinates   1162049..1162987 (+) Length   312 a.a.
NCBI ID   WP_010921798.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain FDAARGOS_774     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1157049..1167987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIU13_RS06115 (FIU13_06115) rpoC 1157798..1161439 (+) 3642 WP_010921797.1 DNA-directed RNA polymerase subunit beta' -
  FIU13_RS06120 (FIU13_06120) - 1161591..1161956 (+) 366 WP_002986560.1 DUF1033 family protein -
  FIU13_RS06125 (FIU13_06125) comYA 1162049..1162987 (+) 939 WP_010921798.1 competence type IV pilus ATPase ComGA Machinery gene
  FIU13_RS06130 (FIU13_06130) comYB 1162923..1163957 (+) 1035 WP_011054115.1 competence type IV pilus assembly protein ComGB Machinery gene
  FIU13_RS06135 (FIU13_06135) comYC 1163959..1164285 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  FIU13_RS06140 (FIU13_06140) comGD 1164260..1164688 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  FIU13_RS06145 (FIU13_06145) comGE 1164645..1164929 (+) 285 WP_002987779.1 competence type IV pilus minor pilin ComGE -
  FIU13_RS06150 (FIU13_06150) comYF 1164922..1165356 (+) 435 WP_010921800.1 competence type IV pilus minor pilin ComGF Machinery gene
  FIU13_RS06155 (FIU13_06155) comGG 1165340..1165666 (+) 327 WP_010921801.1 competence type IV pilus minor pilin ComGG -
  FIU13_RS06160 (FIU13_06160) comYH 1165764..1166717 (+) 954 WP_010921802.1 class I SAM-dependent methyltransferase Machinery gene
  FIU13_RS06165 (FIU13_06165) - 1166776..1167972 (+) 1197 WP_010921803.1 acetate kinase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35068.31 Da        Isoelectric Point: 8.5825

>NTDB_id=368609 FIU13_RS06125 WP_010921798.1 1162049..1162987(+) (comYA) [Streptococcus pyogenes strain FDAARGOS_774]
MVQALAKAILAKAEQVHAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKFVAGMIVGEKRRCQVGSCDYK
LSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISNYHQEA
QVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRASLTGAMVFSTVHAKSISGV
YARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII

Nucleotide


Download         Length: 939 bp        

>NTDB_id=368609 FIU13_RS06125 WP_010921798.1 1162049..1162987(+) (comYA) [Streptococcus pyogenes strain FDAARGOS_774]
ATGGTACAAGCATTAGCAAAAGCTATTCTAGCAAAAGCTGAACAGGTTCATGCACAAGATATTTATATTTTGCCAAGAGC
AGATCAATATGATCTTTTTTTACGAATAGGAGATGAAAGGAGATTAGTTGATGTTTATCAGAGCGATCGGATGGCTCCTC
TTATTAGTCACTTTAAATTCGTTGCAGGAATGATAGTTGGTGAAAAGAGACGTTGTCAGGTGGGTTCATGTGATTATAAG
CTTAGTAAAGATAAGCAGTTATCTTTGCGCTTATCTAGCGTGGGTGATTATCGCGGGCAAGAAAGCTTAGTGATTCGTCT
GCTTCATCATCAAAATAAAAGTGTACATTATTGGTTTGATGGATTGACAAAAGTAGCCAATCAGGTTGGCGGTAGAGGGT
TGTATTTATTTGCAGGACCAGTTGGGTCTGGGAAGACAACCTTGATGTACCAGCTGATTTCGAATTATCATCAAGAAGCA
CAGGTTATTAGTATAGAAGATCCTGTAGAAATTAAAAATCACCAAATTTTACAATTACAAGTGAATGATGATATTGGTAT
GACTTATGACAATTTGATCAAACTGTCTTTACGCCATCGACCAGATATTTTAGTTATTGGTGAGATTCGAGATAGTCAAA
CAGCAAGAGCCGTTATTAGGGCTAGTCTAACAGGTGCCATGGTTTTTTCAACGGTTCACGCTAAAAGTATCTCGGGTGTT
TATGCAAGATTGTTAGAACTTGGTGTAACGAAAGCAGAACTGTCTAATTGCTTAGCATTAATTGCTTACCAAAGGTTACT
TAATGGAGGAGCATTGATTGACTCTACTCAAAACGAATTTGAATATTATTCCTCATCGAACTGGAATCAACAAATTGATC
AGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA140

61.736

99.679

0.615
  comYA Streptococcus mutans UA159

61.736

99.679

0.615
  comYA Streptococcus gordonii str. Challis substr. CH1

60.772

99.679

0.606
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

60.323

99.359

0.599
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

59.486

99.679

0.593
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae D39

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae R6

58.842

99.679

0.587
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

58.842

99.679

0.587
  comGA Lactococcus lactis subsp. cremoris KW2

50.482

99.679

0.503
  comGA Latilactobacillus sakei subsp. sakei 23K

39.655

92.949

0.369

Multiple sequence alignment