Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   GZH78_RS22045 Genome accession   NZ_CP048408
Coordinates   4934448..4934804 (-) Length   118 a.a.
NCBI ID   WP_039770657.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain DR397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4929448..4939804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS22020 (GZH78_22025) - 4930257..4930817 (-) 561 WP_039770650.1 DUF1285 domain-containing protein -
  GZH78_RS22025 (GZH78_22030) - 4930833..4931438 (-) 606 WP_007950810.1 DUF4823 domain-containing protein -
  GZH78_RS22030 (GZH78_22035) - 4931560..4932528 (-) 969 WP_039770652.1 radical SAM protein -
  GZH78_RS22035 (GZH78_22040) - 4932667..4933305 (-) 639 WP_007950805.1 TetR/AcrR family transcriptional regulator -
  GZH78_RS22040 (GZH78_22045) - 4933647..4934432 (-) 786 WP_039770654.1 TatD family hydrolase -
  GZH78_RS22045 (GZH78_22050) pilZ 4934448..4934804 (-) 357 WP_039770657.1 PilZ domain-containing protein Machinery gene
  GZH78_RS22050 (GZH78_22055) - 4934847..4935830 (-) 984 WP_039770660.1 DNA polymerase III subunit delta' -
  GZH78_RS22055 (GZH78_22060) tmk 4935823..4936455 (-) 633 WP_007950797.1 dTMP kinase -
  GZH78_RS22060 (GZH78_22065) mltG 4936475..4937656 (-) 1182 WP_074688101.1 endolytic transglycosylase MltG -
  GZH78_RS22065 (GZH78_22070) pabC 4937660..4938475 (-) 816 WP_039770664.1 aminodeoxychorismate lyase -
  GZH78_RS22070 (GZH78_22075) fabF 4938475..4939719 (-) 1245 WP_007908259.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12770.71 Da        Isoelectric Point: 9.8518

>NTDB_id=368613 GZH78_RS22045 WP_039770657.1 4934448..4934804(-) (pilZ) [Pseudomonas fluorescens strain DR397]
MNEPVSPGPRNGILSLTIKDKSVLYAAYMPFIKNGGLFIPTNKNYKLGDEVFMLLNLMDEAEKIPVAGKVAWITPKGAQG
NRAAGVGVQFNDGDNTARSRIETHLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=368613 GZH78_RS22045 WP_039770657.1 4934448..4934804(-) (pilZ) [Pseudomonas fluorescens strain DR397]
ATGAATGAACCTGTCAGCCCGGGGCCGCGCAACGGCATCTTGTCCCTGACCATCAAGGACAAGTCGGTCCTCTACGCCGC
CTACATGCCGTTCATCAAGAACGGCGGCCTGTTCATCCCGACCAACAAGAACTACAAGTTGGGCGACGAGGTGTTCATGC
TGCTGAACCTGATGGACGAGGCGGAGAAGATTCCGGTGGCCGGCAAAGTCGCCTGGATCACCCCCAAAGGCGCGCAGGGC
AACCGCGCGGCCGGCGTCGGCGTGCAATTCAACGATGGCGACAACACCGCCCGCAGTCGCATCGAAACTCATCTGGCCGG
AGCCCTGAAATCCGACCGTCCCACTCATACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

47.222

91.525

0.432
  pilZ Legionella pneumophila strain ERS1305867

47.222

91.525

0.432

Multiple sequence alignment