Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   GZH78_RS21555 Genome accession   NZ_CP048408
Coordinates   4824636..4824971 (-) Length   111 a.a.
NCBI ID   WP_039770521.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain DR397     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4819636..4829971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS21530 (GZH78_21535) - 4820532..4820699 (+) 168 WP_064598378.1 DUF2897 family protein -
  GZH78_RS21535 (GZH78_21540) - 4820745..4821596 (-) 852 WP_163976084.1 DUF1989 domain-containing protein -
  GZH78_RS21540 (GZH78_21545) - 4821772..4822329 (+) 558 WP_085668132.1 TetR/AcrR family transcriptional regulator -
  GZH78_RS21545 (GZH78_21550) fabF 4822326..4823600 (-) 1275 WP_163976086.1 beta-ketoacyl-ACP synthase II -
  GZH78_RS21550 (GZH78_21555) - 4823627..4824421 (-) 795 WP_085668130.1 SDR family oxidoreductase -
  GZH78_RS21555 (GZH78_21560) comEA/comE1 4824636..4824971 (-) 336 WP_039770521.1 ComEA family DNA-binding protein Machinery gene
  GZH78_RS21560 (GZH78_21565) - 4825082..4827076 (-) 1995 WP_039770523.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  GZH78_RS21565 (GZH78_21570) - 4827224..4828450 (-) 1227 WP_039770525.1 glycosyltransferase family 4 protein -
  GZH78_RS21570 (GZH78_21575) - 4828447..4829466 (-) 1020 WP_039770527.1 glycosyltransferase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 11602.19 Da        Isoelectric Point: 4.8146

>NTDB_id=368611 GZH78_RS21555 WP_039770521.1 4824636..4824971(-) (comEA/comE1) [Pseudomonas fluorescens strain DR397]
MRTGYFYSLIFALLTSASIAAIAAPLASSEANKAAVVMDASATSENQKVDLNGADAATLQKELAGVGEAKAKAIVAYRET
NGPFASVDELLEVKGIGKAILDRNRDKLEVN

Nucleotide


Download         Length: 336 bp        

>NTDB_id=368611 GZH78_RS21555 WP_039770521.1 4824636..4824971(-) (comEA/comE1) [Pseudomonas fluorescens strain DR397]
ATGCGTACCGGATATTTCTACTCCCTGATTTTTGCCTTGCTGACCAGCGCCTCTATTGCTGCCATTGCTGCGCCTCTGGC
TTCTTCAGAAGCGAACAAGGCAGCCGTGGTGATGGACGCGTCAGCCACTTCTGAAAATCAGAAGGTCGATCTGAACGGTG
CCGACGCGGCCACTCTGCAAAAGGAATTGGCAGGCGTGGGCGAGGCCAAGGCGAAAGCGATTGTTGCTTATCGTGAAACA
AATGGGCCATTTGCGTCCGTGGATGAACTGCTCGAAGTGAAGGGTATCGGCAAGGCGATTCTGGATCGTAATCGCGACAA
GCTGGAAGTGAACTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(46-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

41.121

96.396

0.396

Multiple sequence alignment