Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GZH78_RS01150 Genome accession   NZ_CP048408
Coordinates   249638..250738 (+) Length   366 a.a.
NCBI ID   WP_039764930.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain DR397     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 244638..255738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS01130 (GZH78_01130) rsmB 245534..246844 (-) 1311 WP_163973772.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GZH78_RS01135 (GZH78_01135) fmt 246841..247800 (-) 960 WP_074689778.1 methionyl-tRNA formyltransferase -
  GZH78_RS01140 (GZH78_01140) def 247857..248363 (-) 507 WP_039764933.1 peptide deformylase -
  GZH78_RS01145 (GZH78_01145) tsaP 248533..249558 (+) 1026 WP_085667296.1 LysM domain-containing protein Machinery gene
  GZH78_RS01150 (GZH78_01150) dprA 249638..250738 (+) 1101 WP_039764930.1 DNA-processing protein DprA Machinery gene
  GZH78_RS01155 (GZH78_01155) - 250793..251350 (+) 558 WP_039764929.1 L-threonylcarbamoyladenylate synthase -
  GZH78_RS01160 (GZH78_01160) - 251621..252292 (+) 672 WP_163973773.1 hypothetical protein -
  GZH78_RS01165 (GZH78_01165) - 252270..253004 (+) 735 WP_039764924.1 iron-containing redox enzyme family protein -
  GZH78_RS01170 (GZH78_01170) - 253047..254141 (+) 1095 WP_085667293.1 DUF3419 family protein -
  GZH78_RS01175 (GZH78_01175) - 254138..255406 (+) 1269 WP_163973774.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 38705.38 Da        Isoelectric Point: 7.0529

>NTDB_id=368560 GZH78_RS01150 WP_039764930.1 249638..250738(+) (dprA) [Pseudomonas fluorescens strain DR397]
MMMPVSPSVSPAELEARLRLHRLPEIGPKRFTKLLEAFGCASKAIGAPASAWRSLGLPAACAEARRCSEVRDGASHALRW
LERPDQHLLMWDQADYPALLAQIPDPPPLLFVAGDPQILEKPQLAMVGSRRASRPGMDTAAAFSRSLAGAGFVITSGLAL
GIDAAAHQAAVDVGGQTVGVLGTGLENFYPQRNRRLADAMIASGSAVLSEFPLDTGPTASNFPRRNRIISGLSLGVLVVE
ASVASGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGAVLVETIEHILEALRGWQHLPVSTAAANPENPLLSLL
HAAPHTSEGLADSSGWALPKVLAALTELEMDGRAVCENGRWFARVS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=368560 GZH78_RS01150 WP_039764930.1 249638..250738(+) (dprA) [Pseudomonas fluorescens strain DR397]
ATGATGATGCCTGTCTCCCCGTCGGTTTCGCCGGCAGAACTGGAAGCGCGCCTGCGCCTGCACCGCTTGCCGGAAATCGG
TCCCAAGCGTTTCACCAAATTGCTCGAAGCCTTCGGCTGCGCCTCGAAGGCGATCGGCGCGCCGGCCAGCGCCTGGCGCT
CGCTGGGTTTGCCGGCGGCTTGCGCCGAGGCCCGACGCTGTTCTGAAGTTCGCGACGGCGCCAGCCACGCATTGCGCTGG
CTAGAGCGTCCGGATCAACATTTACTGATGTGGGACCAAGCGGATTACCCGGCCTTGCTGGCGCAGATTCCTGACCCTCC
GCCCCTGCTGTTCGTCGCTGGCGACCCGCAGATTCTGGAAAAGCCGCAACTGGCGATGGTCGGCAGTCGCCGCGCTTCTC
GCCCGGGCATGGACACTGCCGCTGCGTTTTCCCGCAGTCTCGCGGGGGCCGGGTTTGTCATCACCAGTGGCCTGGCGCTG
GGCATCGATGCGGCGGCGCATCAAGCCGCTGTGGATGTCGGTGGGCAAACGGTCGGCGTGCTCGGTACCGGCCTGGAAAA
CTTTTATCCACAGCGCAACCGTCGGCTGGCGGACGCGATGATTGCGTCCGGCAGTGCGGTGCTTTCGGAATTTCCTCTGG
ACACCGGGCCGACGGCGAGCAACTTCCCGAGACGCAACCGCATCATCAGCGGCTTGTCCCTCGGCGTGCTGGTGGTCGAG
GCCAGTGTCGCCAGCGGTTCCTTGATCACCGCACGGCTGGCGGCGGAACAGGGGCGTGAGGTGTACGCCATTCCGGGTTC
GATCCATCACCCCGGCGCTCGGGGCTGTCATCAACTGATACGCGACGGAGCCGTGTTGGTGGAAACCATCGAGCATATTC
TCGAAGCCCTGCGCGGCTGGCAGCATCTGCCGGTATCCACAGCCGCAGCGAATCCGGAGAACCCGTTGTTGAGCTTGCTG
CACGCGGCGCCGCACACCAGCGAGGGGCTGGCCGACAGCAGTGGCTGGGCGCTCCCCAAAGTGCTGGCGGCACTCACCGA
ACTGGAGATGGATGGCCGCGCGGTGTGCGAAAACGGCCGCTGGTTTGCGCGCGTGAGCTAG

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-288)

DprA winged helix domain (WHD_DprA)

(307-359)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

42.975

99.18

0.426
  dprA Legionella pneumophila strain ERS1305867

41.854

97.268

0.407
  dprA Acinetobacter baylyi ADP1

40.282

96.995

0.391
  dprA Neisseria meningitidis MC58

44.34

86.885

0.385
  dprA Neisseria meningitidis strain C311

44.34

86.885

0.385
  dprA Neisseria gonorrhoeae strain FA1090

44.481

84.153

0.374
  dprA Neisseria gonorrhoeae MS11

44.156

84.153

0.372
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.202

97.268

0.372
  dprA Glaesserella parasuis strain SC1401

44.595

80.874

0.361
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.595

80.874

0.361
  dprA Vibrio cholerae strain A1552

44.595

80.874

0.361
  dprA Haemophilus influenzae Rd KW20

46.154

78.142

0.361