Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   GZH78_RS01145 Genome accession   NZ_CP048408
Coordinates   248533..249558 (+) Length   341 a.a.
NCBI ID   WP_085667296.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain DR397     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 243533..254558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS01120 (GZH78_01120) - 243800..244114 (-) 315 WP_103385814.1 hypothetical protein -
  GZH78_RS01125 (GZH78_01125) trkA 244135..245511 (-) 1377 WP_007954108.1 Trk system potassium transporter TrkA -
  GZH78_RS01130 (GZH78_01130) rsmB 245534..246844 (-) 1311 WP_163973772.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GZH78_RS01135 (GZH78_01135) fmt 246841..247800 (-) 960 WP_074689778.1 methionyl-tRNA formyltransferase -
  GZH78_RS01140 (GZH78_01140) def 247857..248363 (-) 507 WP_039764933.1 peptide deformylase -
  GZH78_RS01145 (GZH78_01145) tsaP 248533..249558 (+) 1026 WP_085667296.1 LysM domain-containing protein Machinery gene
  GZH78_RS01150 (GZH78_01150) dprA 249638..250738 (+) 1101 WP_039764930.1 DNA-processing protein DprA Machinery gene
  GZH78_RS01155 (GZH78_01155) - 250793..251350 (+) 558 WP_039764929.1 L-threonylcarbamoyladenylate synthase -
  GZH78_RS01160 (GZH78_01160) - 251621..252292 (+) 672 WP_163973773.1 hypothetical protein -
  GZH78_RS01165 (GZH78_01165) - 252270..253004 (+) 735 WP_039764924.1 iron-containing redox enzyme family protein -
  GZH78_RS01170 (GZH78_01170) - 253047..254141 (+) 1095 WP_085667293.1 DUF3419 family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37475.73 Da        Isoelectric Point: 9.0250

>NTDB_id=368559 GZH78_RS01145 WP_085667296.1 248533..249558(+) (tsaP) [Pseudomonas fluorescens strain DR397]
MRKSLLALLFLASAGTAYGQVQLKEGFPQQYTVVSGDTLWDISGKYLREPWQWPQLWRANPQIENPNLIYPGDTLTLSYV
NGQPRLTVNRGESRGTIKLSPRIRTSPVADAIPSIPLKSINSFLLSNRIVDKVEDFDKAPYIVAGDAERVLSGTGDRIFA
RGHFDPNQPVYGIFRQGKVYTDPQSKEFLGINADDIGGGEIVATEGDVATLALQRTTQEVRLGDRLFSGEERSINSTFMP
SAPSTDINGLIIDVPRGVTQIGAMDVVTLNKGKRDGLAEGNVLVVMKTGETVRDRITGQPLKIPDERAGLLMVFRTYDKL
SYGLVLNASRSLAVLDKVRNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=368559 GZH78_RS01145 WP_085667296.1 248533..249558(+) (tsaP) [Pseudomonas fluorescens strain DR397]
ATGAGGAAATCACTACTCGCCCTGCTGTTTCTGGCCTCGGCCGGTACCGCGTACGGGCAAGTGCAACTCAAGGAAGGTTT
TCCACAGCAATACACGGTGGTTTCGGGGGATACGCTCTGGGACATCTCCGGTAAATATTTGCGCGAACCCTGGCAGTGGC
CGCAGTTGTGGCGGGCCAATCCGCAGATCGAAAACCCCAACCTGATCTATCCGGGCGACACGCTGACGCTCAGTTACGTC
AACGGCCAGCCGCGCCTGACCGTCAATCGCGGCGAGTCACGCGGCACCATCAAGCTGTCGCCGCGCATCCGCACCAGTCC
GGTGGCCGATGCGATTCCGAGCATTCCGCTCAAATCGATCAACAGCTTTCTGCTGAGCAACCGCATCGTCGACAAGGTCG
AGGACTTCGACAAGGCGCCGTACATCGTCGCCGGCGATGCCGAACGGGTGCTCAGCGGCACCGGTGACCGGATCTTCGCC
CGTGGCCATTTCGATCCGAACCAGCCGGTCTACGGCATCTTCCGCCAGGGCAAGGTCTACACCGATCCGCAGAGCAAGGA
GTTTCTGGGGATCAACGCCGACGACATCGGCGGTGGTGAGATCGTCGCCACCGAAGGCGACGTCGCCACCCTCGCCCTGC
AACGCACGACCCAGGAAGTGCGCCTCGGCGACCGCTTGTTCAGCGGCGAAGAGCGTTCGATCAACTCGACCTTCATGCCC
AGCGCGCCCTCCACCGACATCAACGGCCTGATCATCGATGTGCCGCGCGGCGTCACGCAGATCGGCGCGATGGACGTGGT
GACCCTGAACAAAGGCAAACGCGACGGTCTGGCCGAAGGCAACGTGCTGGTGGTGATGAAAACCGGGGAAACCGTGCGCG
ACCGGATCACCGGCCAGCCGCTGAAAATCCCGGATGAACGTGCCGGATTGCTGATGGTGTTCCGCACCTACGACAAACTC
AGTTACGGCCTCGTGCTGAACGCATCGCGCTCGCTGGCGGTGCTGGACAAGGTGCGAAATCCTTAG

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

34.239

100

0.37