Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GWK28_RS01535 Genome accession   NZ_CP047973
Coordinates   331593..332033 (+) Length   146 a.a.
NCBI ID   WP_032013886.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DETAB-P2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 326593..337033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GWK28_RS01515 (GWK28_01515) - 327985..328872 (+) 888 WP_032013884.1 metal-dependent hydrolase -
  GWK28_RS01520 (GWK28_01520) - 329003..329593 (+) 591 WP_000846931.1 LemA family protein -
  GWK28_RS01525 (GWK28_01525) - 329615..330697 (+) 1083 WP_032013885.1 YgcG family protein -
  GWK28_RS01530 (GWK28_01530) - 330691..331251 (+) 561 WP_000258945.1 TPM domain-containing protein -
  GWK28_RS01535 (GWK28_01535) pilA 331593..332033 (+) 441 WP_032013886.1 pilin Machinery gene
  GWK28_RS01540 (GWK28_01540) - 332090..333400 (+) 1311 WP_032013888.1 O-antigen ligase -
  GWK28_RS01545 (GWK28_01545) - 333508..335136 (+) 1629 WP_032013890.1 PglL family O-oligosaccharyltransferase -
  GWK28_RS01550 (GWK28_01550) bfr 335178..335642 (-) 465 WP_000678123.1 bacterioferritin -
  GWK28_RS01555 (GWK28_01555) - 335887..336081 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  GWK28_RS01560 (GWK28_01560) - 336291..336674 (-) 384 WP_000090000.1 RidA family protein -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 14846.75 Da        Isoelectric Point: 8.4801

>NTDB_id=366640 GWK28_RS01535 WP_032013886.1 331593..332033(+) (pilA) [Acinetobacter baumannii strain DETAB-P2]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQVNRVYGELSSLKTAAEQLILDGKSSASATDLGYNTSNLLNST
PTVSVNPNNDGTVSIAGTLGTSATSSVNGAVVTLSRTATGAWSCRVTASNNGGWKSSFVPSGCAAS

Nucleotide


Download         Length: 441 bp        

>NTDB_id=366640 GWK28_RS01535 WP_032013886.1 331593..332033(+) (pilA) [Acinetobacter baumannii strain DETAB-P2]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTTATGATCGTGGTTGCCATTATCGGTATTTTGGCGGCAATTGCGAT
TCCTGCGTATCAAAACTATATTGCTAAGTCACAGGTCAATCGTGTTTACGGAGAATTGTCTAGTTTAAAAACCGCTGCTG
AACAGTTAATCCTTGATGGAAAATCTAGTGCTTCTGCTACAGATTTAGGGTATAACACTTCAAATTTATTGAATTCGACT
CCTACCGTAAGTGTAAACCCAAACAATGATGGGACTGTTTCTATTGCAGGTACACTTGGTACTTCAGCGACATCATCTGT
AAATGGAGCTGTAGTAACCTTATCAAGAACAGCTACTGGGGCTTGGAGTTGTAGAGTAACTGCTTCGAATAATGGCGGTT
GGAAGAGCTCATTTGTTCCATCAGGTTGTGCAGCATCTTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(35-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

45.205

100

0.452
  pilA Pseudomonas aeruginosa PAK

41.935

100

0.445
  comP Acinetobacter baylyi ADP1

40.523

100

0.425
  pilA Ralstonia pseudosolanacearum GMI1000

39.869

100

0.418
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40.397

100

0.418
  pilA Vibrio cholerae strain A1552

40.397

100

0.418
  pilA Vibrio cholerae C6706

40.397

100

0.418
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.549

97.26

0.404
  comF Acinetobacter baylyi ADP1

39.31

99.315

0.39
  pilA2 Legionella pneumophila str. Paris

36.913

100

0.377
  pilA Vibrio parahaemolyticus RIMD 2210633

40.441

93.151

0.377
  pilA/pilA1 Eikenella corrodens VA1

34.839

100

0.37