Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   M594_RS08475 Genome accession   NZ_CP047883
Coordinates   1750769..1751365 (+) Length   198 a.a.
NCBI ID   WP_173876559.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V3-A4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1745769..1756365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M594_RS08450 (M594_08490) mapZ 1746680..1748116 (-) 1437 WP_173876555.1 cell division site-positioning protein MapZ -
  M594_RS08455 (M594_08495) - 1748129..1749286 (-) 1158 WP_173876556.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  M594_RS08465 (M594_08505) gpsB 1749773..1750102 (-) 330 WP_173876557.1 cell division regulator GpsB -
  M594_RS08470 (M594_08510) - 1750175..1750702 (-) 528 WP_173876558.1 DUF1273 domain-containing protein -
  M594_RS08475 (M594_08515) recU 1750769..1751365 (+) 597 WP_173876559.1 Holliday junction resolvase RecU Machinery gene
  M594_RS08480 (M594_08520) pbp1a 1751362..1753551 (+) 2190 WP_173876560.1 penicillin-binding protein PBP1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23043.47 Da        Isoelectric Point: 9.8001

>NTDB_id=366336 M594_RS08475 WP_173876559.1 1750769..1751365(+) (recU) [Streptococcus mitis strain S022-V3-A4]
MVNYPHKISSKKSQTSISQPKNFANRGMTFEKMINATNDYYLTHGMAVIHKKPTPVQIVRVDYPQRSRAKIVEAYFRQAS
TTDYSGVYRGHYIDFEAKETRQKNAIPMKNFHLHQIQHMEQVLAQQGICFVLLHFSSQQETYLLPAIDLIRFYHQDKGQK
SMPLGYIQEYGYLVEQGAFPQIPYLDIIKEHLLGGKTR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=366336 M594_RS08475 WP_173876559.1 1750769..1751365(+) (recU) [Streptococcus mitis strain S022-V3-A4]
ATGGTCAACTATCCTCATAAAATTTCATCAAAAAAAAGCCAAACATCCATTTCTCAACCAAAAAATTTCGCAAATCGAGG
AATGACTTTTGAAAAGATGATTAACGCTACAAACGACTACTATCTGACGCATGGCATGGCAGTTATCCATAAAAAGCCAA
CGCCTGTTCAGATTGTTCGAGTAGACTATCCTCAACGTAGTCGAGCCAAAATTGTAGAAGCCTACTTTAGACAAGCTTCC
ACAACAGATTACTCTGGCGTATATAGAGGACATTACATTGACTTTGAAGCCAAGGAAACACGACAAAAGAATGCTATTCC
AATGAAGAATTTTCACCTTCATCAGATTCAGCATATGGAACAAGTCCTTGCCCAGCAAGGAATTTGCTTTGTGCTCCTGC
ACTTTTCTTCTCAACAAGAAACTTATTTATTGCCGGCTATTGACTTGATTCGTTTCTATCATCAAGACAAGGGACAAAAG
TCAATGCCACTTGGATATATTCAAGAATATGGATATTTGGTTGAGCAAGGCGCCTTTCCTCAAATTCCCTATCTCGACAT
TATCAAAGAACATTTACTAGGTGGTAAAACAAGATGA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(26-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

49.5

100

0.5

Multiple sequence alignment