Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FF960_RS10395 Genome accession   NZ_CP040625
Coordinates   2052137..2052565 (-) Length   142 a.a.
NCBI ID   WP_000934775.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JKD6004-DR     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2047137..2057565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FF960_RS10340 (FF960_10355) - 2047206..2047448 (-) 243 WP_000228426.1 phi PVL orf 51-like protein -
  FF960_RS15260 (FF960_10360) - 2047452..2047739 (-) 288 WP_001790906.1 SA1788 family PVL leukocidin-associated protein -
  FF960_RS15265 (FF960_10365) - 2047736..2048065 (-) 330 WP_001790907.1 hypothetical protein -
  FF960_RS10355 (FF960_10370) - 2048066..2048251 (-) 186 WP_001187254.1 DUF3113 family protein -
  FF960_RS10360 (FF960_10375) - 2048256..2048660 (-) 405 WP_000049777.1 DUF1064 domain-containing protein -
  FF960_RS10365 (FF960_10380) - 2048670..2048891 (-) 222 WP_001123680.1 DUF3269 family protein -
  FF960_RS10370 (FF960_10385) - 2048895..2049110 (-) 216 WP_001024405.1 hypothetical protein -
  FF960_RS10375 (FF960_10390) - 2049107..2050348 (-) 1242 WP_001106166.1 DnaB helicase C-terminal domain-containing protein -
  FF960_RS10380 (FF960_10395) - 2050345..2050701 (-) 357 WP_001132243.1 hypothetical protein -
  FF960_RS10385 (FF960_10400) - 2050701..2051456 (-) 756 WP_001037657.1 DnaD domain protein -
  FF960_RS10390 (FF960_10405) - 2051449..2052123 (-) 675 WP_001121810.1 putative HNHc nuclease -
  FF960_RS10395 (FF960_10410) ssbA 2052137..2052565 (-) 429 WP_000934775.1 single-stranded DNA-binding protein Machinery gene
  FF960_RS10400 (FF960_10415) - 2052565..2053218 (-) 654 WP_000840497.1 ERF family protein -
  FF960_RS10405 (FF960_10420) - 2053219..2053755 (-) 537 WP_001004335.1 host-nuclease inhibitor Gam family protein -
  FF960_RS10410 (FF960_10425) - 2053768..2054028 (-) 261 WP_000291101.1 DUF1108 family protein -
  FF960_RS10415 (FF960_10430) - 2054125..2054286 (-) 162 WP_000048124.1 DUF1270 family protein -
  FF960_RS10420 (FF960_10435) - 2054279..2054500 (-) 222 WP_000977378.1 hypothetical protein -
  FF960_RS10425 (FF960_10440) - 2054572..2055237 (+) 666 WP_001791098.1 hypothetical protein -
  FF960_RS15270 - 2055258..2055326 (-) 69 Protein_1962 hypothetical protein -
  FF960_RS10430 (FF960_10445) - 2055351..2056094 (-) 744 WP_001148594.1 phage antirepressor KilAC domain-containing protein -
  FF960_RS10435 (FF960_10450) - 2056151..2056390 (+) 240 WP_000438628.1 hypothetical protein -
  FF960_RS10440 (FF960_10455) - 2056380..2056559 (-) 180 WP_000438352.1 hypothetical protein -
  FF960_RS10445 (FF960_10460) - 2056575..2057339 (-) 765 WP_001002759.1 phage antirepressor Ant -
  FF960_RS10450 (FF960_10465) - 2057339..2057533 (-) 195 WP_000108122.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15934.61 Da        Isoelectric Point: 8.4724

>NTDB_id=365964 FF960_RS10395 WP_000934775.1 2052137..2052565(-) (ssbA) [Staphylococcus aureus strain JKD6004-DR]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYDNKDGKRVFVTEVVADNVQFLEPKNNNQQPSNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=365964 FF960_RS10395 WP_000934775.1 2052137..2052565(-) (ssbA) [Staphylococcus aureus strain JKD6004-DR]
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAATTACCTTTCTAAAGGATCACTGGCAGGTGTAGACGGACGATTACAAACACGT
AGCTACGATAACAAAGACGGGAAACGTGTATTTGTTACAGAAGTAGTAGCGGACAATGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAGCAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.697
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.259

100

0.415
  ssbA Streptococcus mutans UA159

40.845

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae Rx1

38.732

100

0.387
  ssbB/cilA Streptococcus pneumoniae D39

38.732

100

0.387
  ssbB/cilA Streptococcus pneumoniae R6

38.732

100

0.387
  ssbB/cilA Streptococcus mitis SK321

38.732

100

0.387
  ssb Glaesserella parasuis strain SC1401

29.282

100

0.373

Multiple sequence alignment