Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BCPR1_RS16800 Genome accession   NZ_CP040515
Coordinates   3230180..3230515 (-) Length   111 a.a.
NCBI ID   WP_138322090.1    Uniprot ID   -
Organism   Bacillus paranthracis strain PR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3225180..3235515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCPR1_RS16770 (BCPR1_16770) - 3225189..3225965 (-) 777 WP_000637469.1 class I SAM-dependent methyltransferase -
  BCPR1_RS16775 (BCPR1_16775) - 3226015..3226449 (-) 435 WP_000063713.1 BrxA/BrxB family bacilliredoxin -
  BCPR1_RS16780 (BCPR1_16780) - 3226533..3226916 (-) 384 WP_000634875.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  BCPR1_RS16785 (BCPR1_16785) - 3226920..3228047 (-) 1128 WP_000692584.1 conserved virulence factor C family protein -
  BCPR1_RS16790 (BCPR1_16790) - 3228305..3229438 (+) 1134 WP_001066846.1 FAD-dependent monooxygenase -
  BCPR1_RS16795 (BCPR1_16795) - 3229561..3230151 (+) 591 WP_138322089.1 TetR/AcrR family transcriptional regulator -
  BCPR1_RS16800 (BCPR1_16800) ssbA 3230180..3230515 (-) 336 WP_138322090.1 single-stranded DNA-binding protein Machinery gene
  BCPR1_RS16805 (BCPR1_16805) - 3230674..3230928 (-) 255 WP_138322091.1 DUF4318 domain-containing protein -
  BCPR1_RS16810 (BCPR1_16810) - 3231034..3231765 (-) 732 WP_138322092.1 Bax inhibitor-1/YccA family protein -
  BCPR1_RS16815 (BCPR1_16815) - 3231841..3233736 (-) 1896 WP_000783207.1 ABC-F family ATP-binding cassette domain-containing protein -
  BCPR1_RS16820 (BCPR1_16820) - 3233733..3234380 (-) 648 WP_000163595.1 HD domain-containing protein -
  BCPR1_RS16825 (BCPR1_16825) - 3234490..3235236 (+) 747 WP_000499672.1 hypothetical protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12802.72 Da        Isoelectric Point: 9.7215

>NTDB_id=364874 BCPR1_RS16800 WP_138322090.1 3230180..3230515(-) (ssbA) [Bacillus paranthracis strain PR1]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRAFRNSLGEPQVDFINCVVWRRSAENVTEYCKKGSLVGITGRIHTR
NYEDNQGKRIYITEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=364874 BCPR1_RS16800 WP_138322090.1 3230180..3230515(-) (ssbA) [Bacillus paranthracis strain PR1]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTCGCGTATGC
ACGAGTATGTGTTGCGGTGAATAGAGCTTTTCGAAATAGCTTAGGTGAGCCGCAAGTAGATTTTATTAATTGCGTCGTAT
GGAGAAGGTCAGCTGAGAATGTAACTGAATATTGTAAGAAAGGTTCACTTGTTGGAATTACTGGACGTATTCATACGAGG
AATTACGAGGATAATCAAGGAAAGAGAATATATATAACGGAAGTTGTGATTGAGAGCATTACATTTTTGGAGAGAAGGAG
GGAGGGCGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

95.495

0.577
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

47.619

94.595

0.45
  ssbA Streptococcus mutans UA159

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.636

99.099

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB/cilA Streptococcus pneumoniae R6

42.727

99.099

0.423
  ssbB/cilA Streptococcus pneumoniae Rx1

42.727

99.099

0.423
  ssbB/cilA Streptococcus mitis SK321

42.727

99.099

0.423
  ssbB/cilA Streptococcus pneumoniae D39

42.727

99.099

0.423
  ssbB/cilA Streptococcus mitis NCTC 12261

41.818

99.099

0.414

Multiple sequence alignment