Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FEO92_RS17830 Genome accession   NZ_CP040435
Coordinates   3823011..3824270 (+) Length   419 a.a.
NCBI ID   WP_099589893.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain PEG-42     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3818011..3829270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEO92_RS17810 (FEO92_18005) pilR 3818414..3819787 (+) 1374 WP_049447478.1 sigma-54 dependent transcriptional regulator Regulator
  FEO92_RS17815 (FEO92_18010) pilB 3819893..3821620 (-) 1728 WP_099589890.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FEO92_RS17820 (FEO92_18015) - 3821698..3822117 (-) 420 WP_099589891.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FEO92_RS17825 (FEO92_18020) pilA2 3822192..3822650 (-) 459 WP_099589892.1 pilin Machinery gene
  FEO92_RS17830 (FEO92_18025) pilC 3823011..3824270 (+) 1260 WP_099589893.1 type II secretion system F family protein Machinery gene
  FEO92_RS17835 (FEO92_18030) - 3824279..3825142 (+) 864 WP_032128827.1 A24 family peptidase -
  FEO92_RS17840 (FEO92_18035) coaE 3825154..3825765 (+) 612 WP_099589894.1 dephospho-CoA kinase -
  FEO92_RS17845 (FEO92_18040) - 3825921..3826307 (-) 387 WP_154349555.1 hypothetical protein -
  FEO92_RS17850 (FEO92_18045) - 3826790..3828118 (-) 1329 WP_154349556.1 HAMP domain-containing sensor histidine kinase -
  FEO92_RS17855 (FEO92_18050) - 3828123..3828800 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45882.38 Da        Isoelectric Point: 10.1923

>NTDB_id=364424 FEO92_RS17830 WP_099589893.1 3823011..3824270(+) (pilC) [Stenotrophomonas maltophilia strain PEG-42]
MSVSRSAIKKEPVARATTELLPFVWEGTDKRGVKMKGEQLAKNANLLRAELRKQGINPGQVKAKPKPLFGAAGSAVKPKD
IAFFSRQMATMMKSGVPIVSSLEIIAGGHKNPRMKKLVETIRTDIEGGSSLHEAISRHPVQFDELYRNLVRAGEGAGVLE
TVLETIATYKENMEALKGKIKKAMFYPAMIVLVAFVVSAILLMFVVPQFEEVFKSFGAELPAFTQMIVAASRFMLSWWWL
LLIVLVGSSVGFFMAYKRSPKMQHTFDRLVLKVPVIGQIMNNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
GVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDTMLFKVAEYYEQEVNNAVDALSSLLEPMIMVFIGTIV
GGIVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=364424 FEO92_RS17830 WP_099589893.1 3823011..3824270(+) (pilC) [Stenotrophomonas maltophilia strain PEG-42]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCCGTGGCCCGCGCGACCACGGAACTGCTGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAAGGCGAGCAGTTGGCAAAGAACGCCAATCTGCTGCGGGCGGAGCTACGTAAGC
AGGGGATCAACCCCGGCCAGGTCAAAGCCAAGCCGAAGCCGCTGTTCGGCGCAGCGGGAAGTGCCGTCAAGCCGAAAGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAGTCCGGCGTCCCGATCGTTTCGTCACTGGAGATCATTGCCGG
GGGCCACAAGAATCCCCGGATGAAGAAGCTGGTCGAGACGATCCGTACCGACATCGAAGGCGGCTCTTCGCTGCACGAGG
CGATCAGCCGTCACCCGGTGCAGTTCGACGAGCTCTACCGCAACCTTGTGCGTGCGGGTGAAGGCGCAGGTGTGCTCGAA
ACTGTGCTGGAAACCATTGCGACCTACAAAGAGAACATGGAAGCCCTGAAGGGCAAGATCAAAAAGGCCATGTTCTACCC
GGCCATGATCGTCCTTGTGGCCTTTGTAGTGTCAGCCATCCTGCTGATGTTTGTGGTTCCGCAGTTTGAAGAGGTTTTCA
AGAGCTTCGGCGCCGAGTTGCCTGCGTTTACTCAGATGATCGTGGCTGCCTCGCGATTCATGCTCTCCTGGTGGTGGTTG
CTGCTGATTGTCCTTGTGGGCAGTTCTGTAGGCTTCTTCATGGCCTACAAGCGCTCTCCCAAGATGCAGCACACCTTTGA
CCGTTTGGTGCTCAAAGTGCCGGTCATAGGGCAGATCATGAACAACAGCGCGATTGCTCGTTTCGCCCGCACCACGGCGG
TGACCTTCAAGGCCGGTGTGCCACTGGTGGAGGCCCTGGGCATCGTGGCTGGCGCCACCGGCAACAAGGTCTACGAAGAA
GGCGTGCTGCGGATGCGCGACGACGTGTCGGTCGGCTATCCGGTCAACATGGCCATGAAGCAGCTGAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGCGCGCTGGATACCATGCTTTTCAAGGTGGCCGAGTATTATG
AGCAGGAGGTCAACAATGCCGTGGACGCCTTGAGCAGCCTGCTGGAGCCGATGATCATGGTGTTCATTGGTACCATTGTC
GGTGGCATCGTGATCGGCATGTACCTCCCCATCTTCAAACTCGGCGCCGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Legionella pneumophila strain ERS1305867

51.629

95.227

0.492
  pilC Acinetobacter baylyi ADP1

50

97.375

0.487
  pilC Acinetobacter baumannii D1279779

49.502

95.943

0.475
  pilG Neisseria meningitidis 44/76-A

42.356

95.227

0.403
  pilG Neisseria gonorrhoeae MS11

42.569

94.749

0.403
  pilC Vibrio cholerae strain A1552

40.741

96.659

0.394
  pilC Vibrio campbellii strain DS40M4

39.651

95.704

0.379
  pilC Thermus thermophilus HB27

38.025

96.659

0.368

Multiple sequence alignment