Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   FEO92_RS17815 Genome accession   NZ_CP040435
Coordinates   3819893..3821620 (-) Length   575 a.a.
NCBI ID   WP_099589890.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain PEG-42     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3814893..3826620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEO92_RS17800 (FEO92_17995) sucC 3815165..3816334 (-) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  FEO92_RS17805 (FEO92_18000) - 3816740..3818353 (+) 1614 WP_049447477.1 ATP-binding protein -
  FEO92_RS17810 (FEO92_18005) pilR 3818414..3819787 (+) 1374 WP_049447478.1 sigma-54 dependent transcriptional regulator Regulator
  FEO92_RS17815 (FEO92_18010) pilB 3819893..3821620 (-) 1728 WP_099589890.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FEO92_RS17820 (FEO92_18015) - 3821698..3822117 (-) 420 WP_099589891.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FEO92_RS17825 (FEO92_18020) pilA2 3822192..3822650 (-) 459 WP_099589892.1 pilin Machinery gene
  FEO92_RS17830 (FEO92_18025) pilC 3823011..3824270 (+) 1260 WP_099589893.1 type II secretion system F family protein Machinery gene
  FEO92_RS17835 (FEO92_18030) - 3824279..3825142 (+) 864 WP_032128827.1 A24 family peptidase -
  FEO92_RS17840 (FEO92_18035) coaE 3825154..3825765 (+) 612 WP_099589894.1 dephospho-CoA kinase -
  FEO92_RS17845 (FEO92_18040) - 3825921..3826307 (-) 387 WP_154349555.1 hypothetical protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 62256.22 Da        Isoelectric Point: 5.8743

>NTDB_id=364422 FEO92_RS17815 WP_099589890.1 3819893..3821620(-) (pilB) [Stenotrophomonas maltophilia strain PEG-42]
MNTVTTANLVGITGLARRLVQDGALDEATARDAMARAAAARQPLPTWFAQNKLVSASQLAAANAVEFGMPLFDVSTFDAS
QNAMSLVSEELLRKHNVLPLFKRGGKLFVGTSNPTHALDEIKFHTNLVVEPILVDEDQIRRTLEQWHASHDTIGDALGGD
DEGMANLDVGLGDEDNAGGDSGIDAKGDDTPVVKFVNKVLVDAIRKGASDIHFEPYEDDYRVRLRIDGLLKMVARAPVKL
NQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEPDQQKLFL
EAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDII
MVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCGNCKRPANLPEHA
LLAEGFTQAQLDAGIELYEAVGCDECTEGYKGRTGLYQVMPMTDEIATIVLAGGNALQIAEAAQQIGVNDLRQSALKKAA
AGVTSLAEINRVTKD

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=364422 FEO92_RS17815 WP_099589890.1 3819893..3821620(-) (pilB) [Stenotrophomonas maltophilia strain PEG-42]
ATGAATACCGTAACCACCGCCAACCTCGTCGGCATCACCGGCCTAGCCCGCCGCCTGGTCCAGGACGGCGCCCTCGACGA
GGCTACCGCCCGCGACGCGATGGCCAGGGCCGCCGCCGCCCGCCAGCCGCTGCCTACCTGGTTCGCCCAGAACAAGCTGG
TCAGCGCCTCGCAGCTCGCGGCCGCCAACGCTGTCGAATTCGGCATGCCGCTGTTCGACGTGTCCACGTTCGACGCCAGC
CAGAATGCGATGAGCCTGGTCAGCGAGGAACTGCTGCGCAAGCACAACGTGCTGCCGCTGTTCAAACGCGGCGGCAAGTT
GTTCGTGGGTACCAGCAATCCGACCCATGCGCTGGACGAGATCAAGTTCCACACCAATCTGGTGGTGGAACCGATCCTGG
TGGATGAAGACCAGATCCGCCGGACGCTGGAGCAGTGGCACGCCAGCCACGACACCATCGGCGACGCGCTCGGTGGCGAT
GACGAGGGTATGGCCAACCTCGATGTCGGGTTGGGTGACGAGGACAATGCCGGCGGCGACTCCGGCATCGACGCCAAGGG
TGACGACACCCCGGTGGTGAAGTTCGTCAACAAGGTGCTGGTCGACGCGATCCGCAAGGGCGCATCGGACATCCACTTCG
AACCCTACGAAGACGATTACCGCGTGCGCCTGCGCATCGACGGCTTGCTGAAGATGGTGGCGCGCGCGCCGGTGAAGTTG
AACCAGCGCATTGCCGCGCGCCTGAAGGTGATGGCGCAGCTGGACATCGCCGAGAAGCGCGTGCCGCAGGACGGTCGCAT
CAAGCTCAACCTGTCCAAGACCAAGCAGATCGACTTCCGCGTCAGCACGCTGCCGACCCTGTTCGGCGAGAAGGTGGTGC
TGCGTATCCTCGATGGCAGCGCGGCCAAGCTGGGTATCGACAAGCTGGGCTACGAGCCGGACCAGCAGAAGCTGTTCCTG
GAGGCCATCCACAAGCCGTACGGCATGGTGCTGGTGACCGGCCCGACCGGTTCGGGCAAGACGGTGTCGCTGTACACGGC
GCTGGGCATCCTCAACGATGAGACGCGCAACATCTCCACTGCCGAAGACCCGGTGGAAATTCGTCTGCCCGGCGTCAATC
AGGTACAGCAGAACAACAAGCGCGGCATGACCTTCGCCGCGGCGCTGCGCTCGTTCCTGCGACAGGATCCGGACATCATC
ATGGTCGGCGAAATCCGCGACCTGGAGACGGCCGAGATTGCGATCAAGGCGGCGCAGACCGGCCACATGGTGCTGTCCAC
GCTGCATACCAATGATGCGCCGCAGACCATCGCGCGCCTGATGAACATGGGCATCGCGCCGTACAACATCACCAGCTCGG
TGACGCTGGTGATCGCGCAGCGCCTGGCGCGCCGGCTGTGCGGCAACTGCAAGCGTCCGGCGAATCTGCCGGAGCATGCG
CTGCTGGCCGAAGGCTTCACCCAGGCGCAGCTGGACGCAGGCATTGAGCTGTACGAGGCGGTGGGGTGCGATGAGTGCAC
CGAGGGCTACAAGGGCCGTACCGGTCTCTACCAGGTGATGCCGATGACCGATGAGATCGCTACGATCGTGCTGGCCGGTG
GCAATGCACTGCAGATTGCCGAGGCGGCGCAGCAGATCGGGGTGAATGACCTGCGGCAGTCGGCGTTGAAGAAGGCGGCG
GCGGGTGTGACCAGCCTGGCCGAGATCAATCGCGTTACCAAGGACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(49-149)

Type II/IV secretion system protein (T2SSE)

(198-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

56.966

98.609

0.562
  pilB Acinetobacter baylyi ADP1

56.085

98.609

0.553
  pilB Legionella pneumophila strain ERS1305867

51.839

99.304

0.515
  pilF Neisseria gonorrhoeae MS11

49.206

98.609

0.485
  pilB Vibrio cholerae strain A1552

49.117

98.435

0.483
  pilB Vibrio parahaemolyticus RIMD 2210633

45.884

99.304

0.456
  pilB Vibrio campbellii strain DS40M4

44.64

98.957

0.442
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.879

93.043

0.362

Multiple sequence alignment