Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   FEO92_RS17810 Genome accession   NZ_CP040435
Coordinates   3818414..3819787 (+) Length   457 a.a.
NCBI ID   WP_049447478.1    Uniprot ID   A0AA42XQJ5
Organism   Stenotrophomonas maltophilia strain PEG-42     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3813414..3824787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEO92_RS17795 (FEO92_17990) sucD 3814269..3815144 (-) 876 WP_017356169.1 succinate--CoA ligase subunit alpha -
  FEO92_RS17800 (FEO92_17995) sucC 3815165..3816334 (-) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  FEO92_RS17805 (FEO92_18000) - 3816740..3818353 (+) 1614 WP_049447477.1 ATP-binding protein -
  FEO92_RS17810 (FEO92_18005) pilR 3818414..3819787 (+) 1374 WP_049447478.1 sigma-54 dependent transcriptional regulator Regulator
  FEO92_RS17815 (FEO92_18010) pilB 3819893..3821620 (-) 1728 WP_099589890.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FEO92_RS17820 (FEO92_18015) - 3821698..3822117 (-) 420 WP_099589891.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FEO92_RS17825 (FEO92_18020) pilA2 3822192..3822650 (-) 459 WP_099589892.1 pilin Machinery gene
  FEO92_RS17830 (FEO92_18025) pilC 3823011..3824270 (+) 1260 WP_099589893.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49489.81 Da        Isoelectric Point: 6.3584

>NTDB_id=364421 FEO92_RS17810 WP_049447478.1 3818414..3819787(+) (pilR) [Stenotrophomonas maltophilia strain PEG-42]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNTERPVPGPAAEQGARLLGASPAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFIPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=364421 FEO92_RS17810 WP_049447478.1 3818414..3819787(+) (pilR) [Stenotrophomonas maltophilia strain PEG-42]
ATGAACGAAACCCGCAGCGCCCTCGTCGTCGACGATGAACGCGACATCCGCGAACTGCTGGTACTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACTGCCGCCAACCTGGCCGAAGCACGCGAGTTGCTCGCCAGCAATCCGTACGATCTCTGCATCA
CCGACATGCGGCTGCCGGACGGCAACGGCATCGAGCTGGTCAGCGAGATCGCCCAGCACTACCCACGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCACTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGCCTGGTCAAGCATGCGCTGGAACTCAACAACACCGAACGTCCCGTGCCCGGCCCTGCAG
CCGAACAAGGCGCACGCCTGCTGGGTGCTTCGCCGGCCATGGACGTGCTGCGCACCACCATCGGCAAGGTTGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGTGAATCGGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCATGCCCAGGGCGCACG
TGCGGCCGGACCGTTCATACCGGTCAACTGCGGCGCCATTCCCGGCGAACTGATGGAGAGCGAGTTCTTCGGCCATCGCA
AGGGCAGCTTCAGCGGCGCCCATGCCGACAAGCCCGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCCGAGCTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGAGCGGTCGGTGCGGC
CAATGAGGAGCCGGTGGACGTACGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGATGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAGGGTGCCGCCGCTGCGCGAGCGTCGCCAGGACCTGCCGGAA
CTGGCCGCCGCGGTACTGGCACGCCTGGCCCGCAGCCACGGCCGTGCTACCCCGCTGCTGGCGCCTTCGGCGCTGGAGGC
ACTGGCGCAGTACGCCTTCCCCGGCAACGTGCGCGAACTGGAGAACATCCTGGAACGCGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCGCAACACGCGCCGCGTGCGCCGGGCAGTGCCGCGCCCGCCGAAGCCGTG
GCCGACCTGCAGCCCGGCAGCGCCGCCCTGCCCTCGTACATCGAGCAGCTGGAGCGCAGCGCCATCCAGCGCGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGCACCGCTGCGCAGCTGGGGATTACCTTCCGCGCACTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.377

99.781

0.632
  pilR Acinetobacter baumannii strain A118

48.596

100

0.492

Multiple sequence alignment