Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EUC40_RS15475 Genome accession   NZ_CP040336
Coordinates   3041925..3042260 (-) Length   111 a.a.
NCBI ID   WP_071712886.1    Uniprot ID   -
Organism   Bacillus luti strain FJ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3036925..3047260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC40_RS15450 - 3037700..3038134 (-) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  EUC40_RS15455 - 3038218..3038601 (-) 384 WP_071712889.1 DCC1-like thiol-disulfide oxidoreductase family protein -
  EUC40_RS15460 - 3038605..3039732 (-) 1128 WP_156575894.1 conserved virulence factor C family protein -
  EUC40_RS15465 - 3039991..3041124 (+) 1134 WP_156575895.1 FAD-dependent oxidoreductase -
  EUC40_RS15470 - 3041281..3041871 (+) 591 WP_156575896.1 TetR/AcrR family transcriptional regulator -
  EUC40_RS15475 ssbA 3041925..3042260 (-) 336 WP_071712886.1 single-stranded DNA-binding protein Machinery gene
  EUC40_RS15480 - 3042629..3043513 (-) 885 WP_167520156.1 serine protease -
  EUC40_RS15485 - 3043832..3044563 (-) 732 WP_156575898.1 Bax inhibitor-1/YccA family protein -
  EUC40_RS15490 - 3044639..3046534 (-) 1896 WP_071712884.1 ABC-F family ATP-binding cassette domain-containing protein -
  EUC40_RS15495 - 3046531..3047178 (-) 648 WP_156575899.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12772.56 Da        Isoelectric Point: 9.0991

>NTDB_id=363354 EUC40_RS15475 WP_071712886.1 3041925..3042260(-) (ssbA) [Bacillus luti strain FJ]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=363354 EUC40_RS15475 WP_071712886.1 3041925..3042260(-) (ssbA) [Bacillus luti strain FJ]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGAAGATCGGCTGAGAATGTAACTGAATATTGTACAAAGGGGTCACTTGTTGGGATTACCGGGCGTATTCAAACGAGT
AATTACGATGATGAACAAGGAAAGAGAATATATAGAACGGAAGTTGTGATTGAGAGTATTACATTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

53.774

95.495

0.514
  ssbB Bacillus subtilis subsp. subtilis str. 168

50

100

0.505
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

99.099

0.423
  ssbB Lactococcus lactis subsp. cremoris KW2

43.81

94.595

0.414
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.818

99.099

0.414
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae D39

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae R6

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis SK321

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

40

99.099

0.396

Multiple sequence alignment