Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EUC39_RS21205 Genome accession   NZ_CP040334
Coordinates   4245215..4245550 (-) Length   111 a.a.
NCBI ID   WP_157418146.1    Uniprot ID   -
Organism   Bacillus cereus strain DLOU-Changhai     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4240215..4250550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUC39_RS21180 - 4241257..4242033 (-) 777 WP_053564641.1 class I SAM-dependent methyltransferase -
  EUC39_RS21185 - 4242083..4242517 (-) 435 WP_000063706.1 BrxA/BrxB family bacilliredoxin -
  EUC39_RS21190 - 4242601..4242984 (-) 384 WP_000634891.1 thiol-disulfide oxidoreductase DCC family protein -
  EUC39_RS21195 - 4242988..4244115 (-) 1128 WP_000692587.1 conserved virulence factor C family protein -
  EUC39_RS21200 - 4244410..4244895 (-) 486 WP_088021925.1 Imm26 family immunity protein -
  EUC39_RS21205 ssbA 4245215..4245550 (-) 336 WP_157418146.1 single-stranded DNA-binding protein Machinery gene
  EUC39_RS21210 - 4245712..4245966 (-) 255 WP_053564643.1 DUF4318 domain-containing protein -
  EUC39_RS21215 - 4246072..4246803 (-) 732 WP_001260655.1 Bax inhibitor-1/YccA family membrane protein -
  EUC39_RS21220 - 4246879..4248774 (-) 1896 WP_000783191.1 ABC-F family ATP-binding cassette domain-containing protein -
  EUC39_RS21225 - 4248771..4249418 (-) 648 WP_069355499.1 HD domain-containing protein -
  EUC39_RS21230 - 4249528..4250355 (+) 828 WP_000499697.1 hypothetical protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12857.70 Da        Isoelectric Point: 9.0841

>NTDB_id=363315 EUC39_RS21205 WP_157418146.1 4245215..4245550(-) (ssbA) [Bacillus cereus strain DLOU-Changhai]
MMNRVVLIGRLTKEPELYYTKQGVAYARICIAVNREFRNSLGEQQVDFINCVVWRKSAENVTEYCKKGSLVGITGRIQTS
NYDDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=363315 EUC39_RS21205 WP_157418146.1 4245215..4245550(-) (ssbA) [Bacillus cereus strain DLOU-Changhai]
ATGATGAATAGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTTGCTTATGC
AAGAATATGTATTGCGGTGAATAGAGAATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGAAAATCGGCTGAGAATGTAACTGAATATTGTAAGAAGGGATCACTTGTTGGGATTACAGGGCGTATTCAGACGAGT
AATTACGATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

95.495

0.559
  ssb Latilactobacillus sakei subsp. sakei 23K

55.66

95.495

0.532
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.893

100

0.514
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbA Streptococcus mutans UA159

40

99.099

0.396

Multiple sequence alignment