Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FD735_RS02990 Genome accession   NZ_CP040231
Coordinates   538780..539250 (+) Length   156 a.a.
NCBI ID   WP_000609595.1    Uniprot ID   A0A125YWP2
Organism   Streptococcus sp. 1643     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 533780..544250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS02965 (FD735_02965) - 533846..534322 (+) 477 WP_139658428.1 DUF5590 domain-containing protein -
  FD735_RS02970 (FD735_02970) - 534332..535510 (+) 1179 WP_139658429.1 pyridoxal phosphate-dependent aminotransferase -
  FD735_RS02975 (FD735_02975) asnS 535660..537006 (+) 1347 WP_176553073.1 asparagine--tRNA ligase -
  FD735_RS02980 (FD735_02980) - 537138..538346 (+) 1209 WP_139658431.1 MFS transporter -
  FD735_RS02985 (FD735_02985) rpsF 538478..538768 (+) 291 WP_001151782.1 30S ribosomal protein S6 -
  FD735_RS02990 (FD735_02990) ssbA 538780..539250 (+) 471 WP_000609595.1 single-stranded DNA-binding protein SsbA Machinery gene
  FD735_RS02995 (FD735_02995) rpsR 539282..539521 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  FD735_RS03000 (FD735_03000) - 539802..540311 (+) 510 WP_139658432.1 GNAT family N-acetyltransferase -
  FD735_RS03005 (FD735_03005) wecB 540748..541896 (+) 1149 WP_139658433.1 non-hydrolyzing UDP-N-acetylglucosamine 2-epimerase -
  FD735_RS03010 (FD735_03010) - 541903..542682 (+) 780 WP_139658434.1 hypothetical protein -
  FD735_RS03015 (FD735_03015) - 542825..544135 (+) 1311 WP_042769130.1 glycosyltransferase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17182.08 Da        Isoelectric Point: 5.2065

>NTDB_id=362637 FD735_RS02990 WP_000609595.1 538780..539250(+) (ssbA) [Streptococcus sp. 1643]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGITGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRGVREGHSGGAYSAPTAGQSAPANPVPDFSRSENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=362637 FD735_RS02990 WP_000609595.1 538780..539250(+) (ssbA) [Streptococcus sp. 1643]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTCATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAACTGGGCTAAAAAAGGCTCTCTTATCGGGATCACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTAACAGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGCGG
AGTGCGCGAAGGACATTCAGGTGGAGCTTATTCTGCACCAACTGCTGGTCAATCAGCACCTGCAAATCCAGTACCAGACT
TTTCACGTTCTGAAAATCCATTTGGAGCAACCAATCCATTGGACATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A125YWP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.609
  ssb Latilactobacillus sakei subsp. sakei 23K

52.841

100

0.596
  ssb Neisseria gonorrhoeae MS11

34.286

100

0.385
  ssbB/cilA Streptococcus pneumoniae TIGR4

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae R6

49.573

75

0.372
  ssbB/cilA Streptococcus mitis SK321

49.573

75

0.372
  ssbB/cilA Streptococcus pneumoniae D39

49.573

75

0.372
  ssbB/cilA Streptococcus mitis NCTC 12261

49.573

75

0.372
  ssb Neisseria meningitidis MC58

33.143

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.717

67.949

0.372

Multiple sequence alignment