Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FAZ90_RS01270 Genome accession   NZ_CP039700
Coordinates   269542..271233 (+) Length   563 a.a.
NCBI ID   WP_046209434.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain ECSMB14105     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 264542..276233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ90_RS01250 (FAZ90_01250) pilM 266732..267757 (+) 1026 WP_016767986.1 type IV pilus assembly protein PilM Machinery gene
  FAZ90_RS01255 (FAZ90_01255) pilN 267741..268355 (+) 615 WP_046209435.1 PilN domain-containing protein Machinery gene
  FAZ90_RS01260 (FAZ90_01260) pilO 268348..268977 (+) 630 WP_010435284.1 type 4a pilus biogenesis protein PilO Machinery gene
  FAZ90_RS01265 (FAZ90_01265) pilP 268964..269482 (+) 519 WP_016767989.1 pilus assembly protein PilP Machinery gene
  FAZ90_RS01270 (FAZ90_01270) pilQ 269542..271233 (+) 1692 WP_046209434.1 type IV pilus secretin PilQ Machinery gene
  FAZ90_RS01275 (FAZ90_01275) aroK 271410..271928 (+) 519 WP_009848907.1 shikimate kinase AroK -
  FAZ90_RS01280 (FAZ90_01280) aroB 271953..273041 (+) 1089 WP_010435273.1 3-dehydroquinate synthase -
  FAZ90_RS01285 (FAZ90_01285) - 273122..274639 (+) 1518 WP_016767990.1 SPOR domain-containing protein -
  FAZ90_RS01290 (FAZ90_01290) - 274709..275554 (+) 846 WP_010435266.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 61511.05 Da        Isoelectric Point: 4.3574

>NTDB_id=360164 FAZ90_RS01270 WP_046209434.1 269542..271233(+) (pilQ) [Vibrio cyclitrophicus strain ECSMB14105]
MNRGLQGIVLSVVLFFTVMSHAETSNKLENIDFRVNKDKEAVIIIELATTTAVVDVQRVQEGLSIELINTQVDDDKLYLL
DVKDFATLVEGIEVFRELPSTRLLANISNDYQYEYNLKGRFIEVVVSQPKIDEAAIEKSILEKEGKLISINFQDIPVRNV
LQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKSRLEEELGE
LKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSMLIRELEENIAVIRGIIESLDIPVKQVQIEARIVTVT
EGNLDELGVRWGVYSNNGSFTVGGSIEGNHPSQITPYDDNGGNSAIDDYLNVNLGATSPNASSIAFQVAKLGSDTLLDLE
LSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPG
QVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPKV
VIQ

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=360164 FAZ90_RS01270 WP_046209434.1 269542..271233(+) (pilQ) [Vibrio cyclitrophicus strain ECSMB14105]
ATGAACAGAGGGCTGCAAGGCATTGTGTTGTCGGTGGTGTTGTTTTTTACGGTGATGAGTCATGCAGAGACCTCCAACAA
GCTGGAGAATATTGATTTCAGGGTCAACAAGGACAAAGAAGCGGTCATCATTATTGAACTGGCAACGACTACTGCGGTTG
TCGATGTTCAGCGAGTGCAAGAAGGGTTGAGTATTGAACTGATCAATACTCAGGTTGACGACGATAAACTGTACCTACTG
GACGTAAAGGACTTTGCGACTTTAGTTGAGGGGATTGAAGTCTTTAGGGAGTTGCCGAGCACTCGGCTGTTGGCAAACAT
CTCCAATGACTACCAATATGAGTACAACCTCAAAGGACGTTTTATTGAGGTTGTTGTGAGTCAGCCTAAGATCGATGAAG
CTGCGATTGAGAAAAGTATCTTAGAAAAAGAGGGCAAACTGATATCGATTAACTTCCAAGATATCCCGGTACGAAATGTC
TTGCAGCTGATTGCCGATTACAATGATTTCAATCTAGTCGTATCTGATTCGGTGGCAGGTAACCTAACTTTACGTTTAGA
TGGCGTACCTTGGCAGCAAGTTCTCGATATTATCTTGCAAGTTAAAGGCTTAGATAAACGTGTTGATGGCAACGTTATCT
TGGTCGCACCGAAAGCGGAACTCGATCTTCGAGAGCAGCAAGCGCTCGAGAAATCGCGTTTAGAAGAGGAGTTGGGTGAA
CTCAAATCTGAAATCATCAAAATCAACTTTGCTAAAGCGACCGACATTGCCGACATGATTGGCGGTGAAGGTGCGGTGAG
TATGTTGTCTGATCGAGGTTCAATTACCATTGATGAACGAACCAACTCAATGCTCATTCGTGAGTTGGAAGAAAACATTG
CGGTGATCCGAGGCATCATTGAATCGCTAGATATTCCGGTGAAGCAAGTTCAGATAGAGGCGCGCATCGTAACTGTCACC
GAGGGTAACCTGGATGAGCTTGGTGTGCGCTGGGGCGTTTACTCAAACAACGGAAGCTTCACCGTTGGCGGTTCAATTGA
AGGCAACCACCCATCGCAAATTACGCCGTATGACGATAATGGTGGGAATAGTGCGATTGATGATTATCTCAACGTCAATT
TAGGGGCAACATCGCCGAACGCATCGAGTATTGCGTTTCAGGTTGCTAAGTTGGGTTCGGATACGCTGCTCGATCTTGAA
TTATCAGCGCTACAACAAGAATCTAAAGCCGAAATAATTTCGAGCCCACGCTTAATCACCACCAATAAAAAACCGGCTTA
TATTGAGCAAGGTACGGAAATTCCTTATTTGGAGTCCTCTTCAAGTGGTGCAACGTCGGTCGCATTTAAGAAAGCGGTAT
TAAGTTTGAAGGTGACACCGCAGATCACGCCAGATAACCGCTTAGTGTTGGACTTGAGTGTGACTCAAGATAGACCTGGG
CAGGTAGTGAAAACAGGAACGGGCGAAGCAGTGGCCATTGATACTCAACGAATAGGAACGCAAGTGCTTGTTAATAATGG
TGAAACGGTCGTACTTGGCGGGATTTTTCAACATAGTGTCAGCAGTACTGTCGACAAAGTTCCGCTGTTGGGCGACCTGC
CAGTTTTAGGCGCATTGTTCCGTCGCAGCTATGAAAATGTAGGCAAAAGTGAACTGCTTATTTTTGTTACACCTAAAGTT
GTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(244-309)

Bacterial type II and III secretion system protein (Secretin)

(403-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

81.101

96.803

0.785
  pilQ Vibrio cholerae strain A1552

79.963

96.625

0.773
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

79.963

96.625

0.773
  pilQ Legionella pneumophila strain ERS1305867

42.674

96.98

0.414
  pilQ Legionella pneumophila strain Lp02

42.674

96.98

0.414
  pilQ Pseudomonas aeruginosa PAK

40.426

100

0.405
  pilQ Acinetobacter baumannii D1279779

37.167

100

0.396
  pilQ Acinetobacter baumannii strain A118

37.167

100

0.396
  comQ Acinetobacter baylyi ADP1

39.046

100

0.393

Multiple sequence alignment