Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   FAZ90_RS01255 Genome accession   NZ_CP039700
Coordinates   267741..268355 (+) Length   204 a.a.
NCBI ID   WP_046209435.1    Uniprot ID   -
Organism   Vibrio cyclitrophicus strain ECSMB14105     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 262741..273355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ90_RS01240 (FAZ90_01240) oxyR 263033..263926 (+) 894 WP_010435297.1 DNA-binding transcriptional regulator OxyR -
  FAZ90_RS01245 (FAZ90_01245) - 264022..266580 (-) 2559 WP_032547293.1 penicillin-binding protein 1A -
  FAZ90_RS01250 (FAZ90_01250) pilM 266732..267757 (+) 1026 WP_016767986.1 type IV pilus assembly protein PilM Machinery gene
  FAZ90_RS01255 (FAZ90_01255) pilN 267741..268355 (+) 615 WP_046209435.1 PilN domain-containing protein Machinery gene
  FAZ90_RS01260 (FAZ90_01260) pilO 268348..268977 (+) 630 WP_010435284.1 type 4a pilus biogenesis protein PilO Machinery gene
  FAZ90_RS01265 (FAZ90_01265) pilP 268964..269482 (+) 519 WP_016767989.1 pilus assembly protein PilP Machinery gene
  FAZ90_RS01270 (FAZ90_01270) pilQ 269542..271233 (+) 1692 WP_046209434.1 type IV pilus secretin PilQ Machinery gene
  FAZ90_RS01275 (FAZ90_01275) aroK 271410..271928 (+) 519 WP_009848907.1 shikimate kinase AroK -
  FAZ90_RS01280 (FAZ90_01280) aroB 271953..273041 (+) 1089 WP_010435273.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23300.78 Da        Isoelectric Point: 9.3072

>NTDB_id=360161 FAZ90_RS01255 WP_046209435.1 267741..268355(+) (pilN) [Vibrio cyclitrophicus strain ECSMB14105]
MLHQINLLSWRDEIRAQHKKRFIHLVILGVIIALAGQWAVGHYFHDQQAKQQARLSYLDKYIGVLDRQIQSLKVAEQEHK
AILTRLAVVESLQFGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSDSLKEVEMHSIV
HNRKRFNKEFPSFKVSFVFSPVSLENTTAEGTTANIKEKGANHG

Nucleotide


Download         Length: 615 bp        

>NTDB_id=360161 FAZ90_RS01255 WP_046209435.1 267741..268355(+) (pilN) [Vibrio cyclitrophicus strain ECSMB14105]
ATGTTGCATCAAATTAACCTGTTGTCGTGGCGTGATGAGATTCGCGCTCAGCATAAAAAGCGTTTCATTCATCTGGTCAT
TCTTGGCGTCATCATTGCGCTTGCCGGGCAATGGGCGGTGGGACACTATTTTCATGACCAACAAGCCAAGCAGCAAGCGC
GCCTCAGTTATCTCGATAAGTACATCGGAGTGCTCGACCGACAAATCCAGTCATTAAAAGTCGCAGAGCAAGAGCACAAA
GCCATCCTTACACGACTTGCTGTCGTGGAGTCTTTACAGTTCGGGCGCAATAAAACCACCGACTTTATGAACCTGATGCC
GGAGCTGATTCCTGAGGGCGTGTATGTCGACAAGATAAAGATGAATGGTCAGGAGATTGAAATGTCGGGCATCAGCGACA
GCACCGCTCGTCTAGCCACCATGTTGGACAACCTAGAACGTTCTGACTCTCTTAAAGAAGTTGAGATGCACTCTATTGTT
CATAACCGTAAGCGCTTCAATAAAGAGTTTCCGAGCTTCAAGGTCTCTTTTGTGTTTAGCCCTGTTTCTTTAGAAAACAC
AACCGCAGAGGGCACAACTGCGAACATAAAAGAGAAGGGGGCGAATCATGGCTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

63.212

94.608

0.598
  pilN Vibrio campbellii strain DS40M4

61.257

93.627

0.574

Multiple sequence alignment