Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   E4167_RS05565 Genome accession   NZ_CP039631
Coordinates   1225818..1227143 (-) Length   441 a.a.
NCBI ID   WP_155678895.1    Uniprot ID   A0A5Q2UC58
Organism   Pseudomonas veronii strain Pvy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1220818..1232143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4167_RS05550 (E4167_05785) - 1222494..1224056 (-) 1563 WP_046490816.1 AAA family ATPase -
  E4167_RS05555 (E4167_05790) aroB 1224067..1225167 (-) 1101 WP_017849857.1 3-dehydroquinate synthase -
  E4167_RS05560 (E4167_05795) aroK 1225293..1225813 (-) 521 Protein_1103 shikimate kinase AroK -
  E4167_RS05565 (E4167_05800) pilQ 1225818..1227143 (-) 1326 WP_155678895.1 type IV pilus secretin PilQ family protein Machinery gene
  E4167_RS05570 (E4167_05805) - 1227213..1228184 (-) 972 WP_046490821.1 pilus assembly protein PilP -
  E4167_RS05575 (E4167_05810) - 1228181..1228735 (-) 555 WP_046490823.1 PilN domain-containing protein -
  E4167_RS05580 (E4167_05815) pilM 1228732..1229385 (-) 654 WP_163957448.1 type IV pilus assembly protein PilM -
  E4167_RS05585 (E4167_05820) - 1229603..1232068 (+) 2466 WP_046490828.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 47824.31 Da        Isoelectric Point: 4.6234

>NTDB_id=360099 E4167_RS05565 WP_155678895.1 1225818..1227143(-) (pilQ) [Pseudomonas veronii strain Pvy]
MAAAVPNRVDLIQLPPPGGAASGTYTGDKLNLNFQNIELRAVLQQIADVAGLNLVASDDVQGSITLRLKDVPWDQALDLV
LQSKGLDQRVKAGVLLVAPADELAARELLTLESRKQMAELAPLRRELLQVNYAKAADLAKLFQSVTGLEGATDERGSVAV
DDRTNNIIAYQTGERLEELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGRINRGNWGAGGVEKPPEPGTEPVE
NPSGSPFVDLGALTNTSGLGVAFITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSSGATSV
SFKEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVRDGETIVIGGVFSNTQSKVLDKVPF
LGDVPYLGRLFRRDVLAEXKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=360099 E4167_RS05565 WP_155678895.1 1225818..1227143(-) (pilQ) [Pseudomonas veronii strain Pvy]
ATGGCTGCTGCTGTGCCCAATCGTGTAGATCTGATCCAACTGCCGCCTCCCGGCGGTGCGGCATCAGGTACCTATACCGG
CGACAAGCTGAACCTCAACTTCCAGAACATCGAGCTGCGCGCCGTGTTGCAGCAGATTGCCGATGTGGCGGGCCTGAATC
TGGTCGCCAGTGACGATGTGCAAGGTTCGATCACCCTGCGGCTCAAGGACGTGCCTTGGGATCAGGCGCTGGACCTGGTG
TTGCAAAGCAAGGGGCTGGACCAGCGGGTGAAGGCCGGGGTGCTGTTGGTGGCGCCCGCCGACGAGTTGGCCGCGCGCGA
GCTGCTGACGCTGGAGTCGCGCAAGCAGATGGCTGAACTGGCGCCATTGCGGCGCGAACTGTTGCAGGTCAATTACGCCA
AGGCTGCGGACCTGGCCAAGTTGTTCCAATCGGTGACCGGCCTGGAAGGCGCCACCGACGAACGCGGCTCGGTGGCGGTG
GATGACCGCACCAATAACATCATTGCCTACCAGACCGGCGAACGCCTGGAAGAGCTGCGCCGCATCGTGGCGCAGCTGGA
TATTCCGGTGCGCCAGGTGATGATCGAGGCGCGGATTGTCGAGGCCAATGTCGACTACGACAAAAGCCTGGGCGTGCGCT
GGGGAGGGCGGATCAATCGCGGCAACTGGGGCGCCGGCGGTGTCGAGAAACCTCCGGAGCCAGGCACCGAGCCTGTGGAA
AACCCGTCCGGCTCGCCCTTTGTCGACTTGGGGGCGCTCACCAACACTTCTGGCCTGGGTGTCGCGTTTATCACCGACAA
CCTGCTGCTGGACCTGGAACTGACCGCGATGGAAAAAACCGGCAACGGCGAGATTGTCTCGCAGCCCAAGGTGGTCACGT
CCGACAAGGAGACCGCGCGCATCCTCAAGGGCACCGAGATTCCCTACCAGGAATCCAGCTCCAGCGGCGCCACCTCGGTG
TCGTTCAAGGAGGCTTCGCTGTCCCTGGAAGTCACCCCGCAAATCACCCCCGACGACCGCGTGATCATGGAGGTCAAAGT
CACCAAGGATGAGCCGGATTACCTGAACAAGCTCAACGACGTACCGCCGATCAAGAAAAACGAGGTCAACGCCAAGGTGC
TGGTCAGGGACGGCGAGACCATCGTCATCGGCGGAGTTTTCTCCAATACCCAAAGCAAAGTGCTAGATAAAGTGCCATTT
TTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGCGATGTGCTGGCAGAANAAAAATCCGAGCTGCTGGTATTCCT
GACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(276-432)

Secretin and TonB N terminus short domain (STN)

(53-99)

Bacterial type II/III secretion system short domain (Secretin_N)

(127-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.706

98.866

0.719
  comQ Acinetobacter baylyi ADP1

43.363

100

0.444
  pilQ Acinetobacter baumannii strain A118

40.605

100

0.426
  pilQ Acinetobacter baumannii D1279779

40.605

100

0.426
  pilQ Legionella pneumophila strain ERS1305867

43.839

95.692

0.42
  pilQ Legionella pneumophila strain Lp02

43.839

95.692

0.42
  pilQ Vibrio campbellii strain DS40M4

43.735

95.918

0.419
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

43.301

94.785

0.41
  pilQ Vibrio cholerae strain A1552

43.301

94.785

0.41
  pilQ Neisseria meningitidis M1080

36.166

100

0.376
  pilQ Neisseria meningitidis MC58

36.166

100

0.376
  pilQ Neisseria gonorrhoeae strain FA1090

35.637

100

0.374

Multiple sequence alignment