Detailed information NTG0035926

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: LLKF_RS11870
• Genome accession: NC_013656
• Coordinates: 2412042..2412425 (-)
• Length: 127 a.a.
• NCBI ID: WP_012898622.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis KF147
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2407042..2417425

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LLKF_RS11830 (LLKF_2362)	-	2407578..2408387 (-)	810	WP_012898616.1	metal ABC transporter permease	-
LLKF_RS11835 (LLKF_2363)	-	2408380..2409117 (-)	738	WP_012898617.1	metal ABC transporter ATP-binding protein	-
LLKF_RS11840 (LLKF_2364)	-	2409294..2410136 (-)	843	WP_012898618.1	metal ABC transporter substrate-binding protein	-
LLKF_RS11845 (LLKF_2365)	-	2410133..2410570 (-)	438	WP_010906313.1	zinc-dependent MarR family transcriptional regulator	-
LLKF_RS11850 (LLKF_2366)	comGG	2410651..2410935 (-)	285	WP_012898619.1	competence type IV pilus minor pilin ComGG	Machinery gene
LLKF_RS11855 (LLKF_2367)	comGF	2410974..2411420 (-)	447	WP_038603761.1	competence type IV pilus minor pilin ComGF	Machinery gene
LLKF_RS11860 (LLKF_2368)	comGE	2411383..2411679 (-)	297	WP_010906316.1	competence type IV pilus minor pilin ComGE	Machinery gene
LLKF_RS11865 (LLKF_2369)	comGD	2411651..2412082 (-)	432	WP_012898621.1	competence type IV pilus minor pilin ComGD	Machinery gene
LLKF_RS11870 (LLKF_2370)	comGC	2412042..2412425 (-)	384	WP_012898622.1	competence type IV pilus major pilin ComGC	Machinery gene
LLKF_RS11875 (LLKF_2371)	comGB	2412439..2413512 (-)	1074	WP_012898623.1	competence type IV pilus assembly protein ComGB	Machinery gene
LLKF_RS11880 (LLKF_2372)	comGA	2413406..2414344 (-)	939	WP_012898624.1	competence type IV pilus ATPase ComGA	Machinery gene
LLKF_RS11885	-	2414614..2414796 (-)	183	WP_038603763.1	hypothetical protein	-
LLKF_RS11890 (LLKF_2373)	-	2414787..2415542 (-)	756	WP_012898625.1	hypothetical protein	-

Sequence

Protein

• Length: 127 a.a.
• Molecular weight: 14825.41 Da
• Isoelectric Point: 8.4563

>NTDB_id=35926 LLKF_RS11870 WP_012898622.1 2412042..2412425(-) (comGC) [Lactococcus lactis subsp. lactis KF147]
MERTKKFILKKIQKIFLFVKICEKKCRQKELRAFTLIEMLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQA
QLYELDHDDEKPSLSELLSAGMITQKQISAYDNYYDQNKNEERNFND

Nucleotide

• Length: 384 bp

>NTDB_id=35926 LLKF_RS11870 WP_012898622.1 2412042..2412425(-) (comGC) [Lactococcus lactis subsp. lactis KF147]
ATGGAAAGAACTAAGAAGTTTATTTTAAAGAAAATACAAAAAATATTTTTATTCGTTAAAATTTGTGAAAAAAAATGCCG
TCAGAAAGAGCTAAGAGCTTTTACTTTGATAGAGATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTG
TTCCAAATTTAATTAAAGAAAAATCACAAGTTCAAAAAACTGGAGAAGCGGCAGTTGTAAAAGTAGTAGAAAGTCAAGCT
CAACTTTATGAATTAGATCATGATGATGAGAAGCCGAGTCTGTCAGAATTGCTCAGCGCTGGGATGATTACTCAAAAACA
AATTTCTGCTTACGATAATTACTATGATCAGAATAAAAATGAAGAACGAAATTTTAATGACTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (32-52)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Lactococcus lactis subsp. cremoris KW2	80.172	91.339	0.732
comYC	Streptococcus mutans UA159	56.436	79.528	0.449
comYC	Streptococcus mutans UA140	56.436	79.528	0.449
comGC/cglC	Streptococcus mitis SK321	55.446	79.528	0.441
comYC	Streptococcus gordonii str. Challis substr. CH1	55.556	77.953	0.433
comGC/cglC	Streptococcus pneumoniae TIGR4	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae Rx1	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae D39	53.465	79.528	0.425
comGC/cglC	Streptococcus pneumoniae R6	53.465	79.528	0.425
comGC/cglC	Streptococcus mitis NCTC 12261	57.303	70.079	0.402
comYC	Streptococcus suis isolate S10	55.682	69.291	0.386