Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   E4Z98_RS01745 Genome accession   NZ_CP038865
Coordinates   348015..348296 (+) Length   93 a.a.
NCBI ID   WP_135254949.1    Uniprot ID   A0AAJ5JM13
Organism   Vagococcus xieshaowenii strain CF-49     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343015..353296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4Z98_RS01725 (E4Z98_01725) - 343567..345366 (-) 1800 WP_135254945.1 M3 family oligoendopeptidase -
  E4Z98_RS01730 (E4Z98_01730) - 345554..345997 (+) 444 WP_241856739.1 VanZ family protein -
  E4Z98_RS01735 (E4Z98_01735) comGA 346079..346999 (+) 921 WP_167790949.1 competence type IV pilus ATPase ComGA -
  E4Z98_RS01740 (E4Z98_01740) comGB 346996..348018 (+) 1023 WP_167790950.1 competence type IV pilus assembly protein ComGB -
  E4Z98_RS01745 (E4Z98_01745) comGC/cglC 348015..348296 (+) 282 WP_135254949.1 competence type IV pilus major pilin ComGC Machinery gene
  E4Z98_RS01750 (E4Z98_01750) - 348365..348745 (+) 381 WP_280953123.1 hypothetical protein -
  E4Z98_RS01755 (E4Z98_01755) - 348720..349055 (+) 336 WP_135254951.1 hypothetical protein -
  E4Z98_RS01760 (E4Z98_01760) comGF 349042..349494 (+) 453 WP_135254952.1 competence type IV pilus minor pilin ComGF -
  E4Z98_RS01765 (E4Z98_01765) - 349484..349813 (+) 330 WP_135254953.1 hypothetical protein -
  E4Z98_RS01770 (E4Z98_01770) metG 349980..351980 (+) 2001 WP_135254954.1 methionine--tRNA ligase -
  E4Z98_RS01775 (E4Z98_01775) - 352122..352892 (+) 771 WP_135254955.1 TatD family hydrolase -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10480.32 Da        Isoelectric Point: 8.4215

>NTDB_id=356034 E4Z98_RS01745 WP_135254949.1 348015..348296(+) (comGC/cglC) [Vagococcus xieshaowenii strain CF-49]
MKKKKYQAFTLIEMMVVLFIISVLILLFVPNLSKQKNKVDAEGKSALQSVLTSQVTLYQMNETGDVTLDNLVSKGYITEK
QKEQAEGWGIEVP

Nucleotide


Download         Length: 282 bp        

>NTDB_id=356034 E4Z98_RS01745 WP_135254949.1 348015..348296(+) (comGC/cglC) [Vagococcus xieshaowenii strain CF-49]
ATGAAAAAGAAAAAATATCAAGCATTTACTTTAATTGAAATGATGGTCGTTTTATTTATAATTTCTGTGCTAATTTTATT
GTTTGTCCCTAATTTAAGCAAACAAAAGAACAAAGTAGATGCTGAAGGGAAATCTGCCCTTCAGTCAGTTTTAACCTCAC
AAGTAACGCTTTATCAAATGAATGAGACAGGAGATGTTACGCTTGATAACTTGGTATCAAAAGGTTACATAACCGAAAAA
CAAAAAGAACAAGCTGAAGGCTGGGGGATTGAGGTCCCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus mitis NCTC 12261

52.273

94.624

0.495
  comGC/cglC Streptococcus pneumoniae Rx1

52.273

94.624

0.495
  comGC/cglC Streptococcus pneumoniae D39

52.273

94.624

0.495
  comGC/cglC Streptococcus pneumoniae R6

52.273

94.624

0.495
  comGC/cglC Streptococcus pneumoniae TIGR4

52.273

94.624

0.495
  comGC/cglC Streptococcus mitis SK321

52.273

94.624

0.495
  comYC Streptococcus gordonii str. Challis substr. CH1

50.562

95.699

0.484
  comYC Streptococcus mutans UA159

51.724

93.548

0.484
  comYC Streptococcus mutans UA140

51.724

93.548

0.484
  comGC Lactococcus lactis subsp. cremoris KW2

52.5

86.022

0.452
  comGC Latilactobacillus sakei subsp. sakei 23K

45.652

98.925

0.452
  comYC Streptococcus suis isolate S10

51.25

86.022

0.441
  comGC Staphylococcus aureus MW2

37.778

96.774

0.366
  comGC Staphylococcus aureus N315

37.778

96.774

0.366

Multiple sequence alignment