Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   GO602_RS00105 Genome accession   NZ_CP046602
Coordinates   22888..23973 (+) Length   361 a.a.
NCBI ID   WP_124181423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CMC-115     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 17888..28973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO602_RS00085 (GO602_00085) rsmB 18783..20087 (-) 1305 WP_024918146.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  GO602_RS00090 (GO602_00090) fmt 20084..21028 (-) 945 WP_024918145.1 methionyl-tRNA formyltransferase -
  GO602_RS00095 (GO602_00095) def 21083..21589 (-) 507 WP_003097293.1 peptide deformylase -
  GO602_RS00100 (GO602_00100) tsaP 21728..22753 (+) 1026 WP_124181424.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GO602_RS00105 (GO602_00105) dprA 22888..23973 (+) 1086 WP_124181423.1 DNA-processing protein DprA Machinery gene
  GO602_RS00110 (GO602_00110) - 24014..24571 (+) 558 WP_024918142.1 L-threonylcarbamoyladenylate synthase -
  GO602_RS00115 (GO602_00115) - 24581..25558 (-) 978 WP_168334225.1 NADPH:quinone reductase -
  GO602_RS00120 (GO602_00120) hemF 25749..26666 (+) 918 WP_124181422.1 oxygen-dependent coproporphyrinogen oxidase -
  GO602_RS00125 (GO602_00125) aroE 26724..27548 (+) 825 WP_024918139.1 shikimate dehydrogenase -
  GO602_RS00130 (GO602_00130) - 27659..28645 (+) 987 WP_121366661.1 phospholipase -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 37679.09 Da        Isoelectric Point: 6.8883

>NTDB_id=353826 GO602_RS00105 WP_124181423.1 22888..23973(+) (dprA) [Pseudomonas aeruginosa strain CMC-115]
MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR
RHLLMWDDPGYPALLAEVADAPPLLYVEGAPETLERPQLAMVGSRRASPSGLGTARSFARSLAQGGFAITSGLALGIDGA
AHEGALEAGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS
GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVDHVLEALRGWAQAEPAEAPAQQPHPLLALLRAAPY
TSEGLAAASGMTLPDVLATLTELELDGRVACEAGTWVHRSG

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=353826 GO602_RS00105 WP_124181423.1 22888..23973(+) (dprA) [Pseudomonas aeruginosa strain CMC-115]
ATGAAGAACCATTCCCCAGCCGAACTGGAAGCACGGCTGCGCCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT
GCGGTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTCCCTG
CCGAGGCCGCCGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC
AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT
CGAAGGCGCTCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCTCCGGGTTGGGCA
CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC
GCCCACGAGGGCGCGCTGGAGGCTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG
CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTCTCGGAACTGCCGCTGGACAGCCCGCCGCTGC
CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC
GGCTCGCTGATCACCGCGCGGCTAGCGGCGGAACAGGGTCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCATCCCGG
CGCACGTGGCTGCCACCAACTGATACGCGATGGCGCGCTGCTGGTGGAAAGCGTCGACCATGTGCTCGAAGCACTGCGCG
GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCTGCGCAGCAGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGCGCCCTAC
ACCAGCGAAGGCCTGGCTGCCGCCAGCGGCATGACGTTGCCCGACGTGCTGGCGACGCTCACCGAACTGGAACTCGACGG
CCGGGTTGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(298-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.514

100

0.446
  dprA Legionella pneumophila strain ERS1305867

43.38

98.338

0.427
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.926

97.784

0.41
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

46.865

83.934

0.393
  dprA Vibrio cholerae strain A1552

46.865

83.934

0.393
  dprA Acinetobacter baumannii D1279779

38.122

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

44.884

83.934

0.377
  dprA Neisseria meningitidis strain C311

46.392

80.609

0.374
  dprA Neisseria meningitidis MC58

46.392

80.609

0.374
  dprA Neisseria gonorrhoeae MS11

44.554

83.934

0.374
  dprA Glaesserella parasuis strain SC1401

46.853

79.224

0.371
  dprA Acinetobacter baumannii strain A118

37.892

97.23

0.368