Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   DCC84_RS02185 Genome accession   NZ_CP038001
Coordinates   469082..470419 (+) Length   445 a.a.
NCBI ID   WP_134327620.1    Uniprot ID   -
Organism   Pseudomonas sp. SXM-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 464082..475419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCC84_RS02165 (DCC84_02165) - 464109..466565 (-) 2457 WP_371316571.1 penicillin-binding protein 1A -
  DCC84_RS02170 (DCC84_02170) pilM 466786..467439 (+) 654 WP_134325606.1 type IV pilus biogenesis protein PilM -
  DCC84_RS02175 (DCC84_02175) - 467439..467990 (+) 552 WP_003209339.1 PilN domain-containing protein -
  DCC84_RS02180 (DCC84_02180) - 467987..469012 (+) 1026 WP_134325607.1 pilus assembly protein PilP -
  DCC84_RS02185 (DCC84_02185) pilQ 469082..470419 (+) 1338 WP_134327620.1 type IV pilus secretin PilQ Machinery gene
  DCC84_RS02190 (DCC84_02190) aroK 470424..470942 (+) 519 WP_003209345.1 shikimate kinase AroK -
  DCC84_RS02195 (DCC84_02195) aroB 471090..472190 (+) 1101 WP_003209346.1 3-dehydroquinate synthase -
  DCC84_RS02200 (DCC84_02200) - 472201..473733 (+) 1533 WP_134325608.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 48476.52 Da        Isoelectric Point: 4.8167

>NTDB_id=351175 DCC84_RS02185 WP_134327620.1 469082..470419(+) (pilQ) [Pseudomonas sp. SXM-1]
MVMAVPNRIDLIHLPPPGNAPLSSGRVAFTGDKLSLNFQNIELRAVLQQIADVAGLNLVTSDDVQGSITLRLKDVPWDQA
LDLVLQTKGLDKRVTANVLLVAPAEELAARELLAMESRKQMTDLAPLRRELLQVNYAKASDLAKLFQSAVGLEGATDERG
SVAVDDRTNNIIAYQTRERLEELRTIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGQLNRGNWSAGGIRKPLAEGT
EPPETPPSSPFVDLGAVNGSAGLGVAFITDNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQESSSTG
ATSVSFKEASLSLEVTPQITPDGWVIMEVKVTKDEPDYLNRLNDVPPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVD
KVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=351175 DCC84_RS02185 WP_134327620.1 469082..470419(+) (pilQ) [Pseudomonas sp. SXM-1]
ATGGTCATGGCTGTGCCCAATCGAATCGACTTGATTCACCTGCCGCCACCTGGCAATGCGCCCCTGAGTTCCGGACGCGT
GGCATTCACCGGGGACAAGCTGTCCCTCAACTTCCAGAACATCGAGTTGCGCGCGGTGCTGCAGCAGATTGCCGACGTTG
CCGGCCTCAATCTGGTGACCAGTGACGACGTGCAGGGTTCGATCACCCTGCGCCTCAAGGACGTGCCCTGGGACCAGGCC
CTGGACCTGGTGCTGCAAACCAAGGGGCTGGACAAGCGTGTGACGGCCAATGTGCTGCTGGTCGCGCCGGCCGAGGAGTT
GGCCGCCCGCGAGTTGCTGGCGATGGAGTCGCGCAAGCAAATGACTGACTTGGCACCGCTGCGCCGCGAGTTGCTGCAAG
TCAATTACGCCAAGGCGTCGGACCTGGCCAAGCTCTTCCAGTCGGCCGTGGGCCTGGAAGGTGCCACCGATGAGCGCGGC
TCGGTGGCGGTGGATGACCGCACCAACAACATCATCGCCTACCAGACCCGGGAGCGGCTGGAGGAGCTGCGTACGATTGT
GGCGCAACTGGATATTCCGGTAAGGCAGGTGATGATCGAGGCGCGGATCGTCGAGGCCAATGTGGATTACGACAAAAGCC
TTGGCGTGCGCTGGGGCGGGCAACTGAATCGGGGTAACTGGAGCGCTGGCGGGATCAGGAAACCGCTGGCCGAAGGCACC
GAGCCGCCTGAAACCCCGCCCAGCTCGCCGTTTGTGGACCTGGGGGCGGTCAACGGCAGCGCCGGCCTGGGTGTCGCGTT
TATCACCGACAACCTGCTGCTGGACCTGGAACTGACCGCCATGGAAAAAACCGGCAATGGTGAAATCGTTTCGCAGCCCA
AGGTCGTCACCTCCGACAAGGAAACCGCGCGAATCCTCAAGGGCACCGAGATTCCCTATCAGGAGTCCAGCTCCACCGGC
GCGACCTCGGTGTCGTTCAAGGAGGCCTCCTTGTCATTGGAAGTGACCCCGCAAATCACCCCGGACGGCTGGGTGATCAT
GGAGGTCAAGGTCACCAAGGACGAGCCCGACTACCTGAACAGGCTCAACGATGTGCCGCCGATCAAGAAAAACGAGGTCA
ATGCCAAGGTGCTGGTCAAGGACGGGGAGACCATCGTGATCGGCGGGGTTTTCTCCAATACTCAAAGCAAAGTGGTAGAT
AAAGTGCCATTTTTGGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGGGATGTGGTTTCGGAGAAAAAATCCGAGCT
GCTGGTATTCCTGACTCCGCGTATTATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(280-436)

Secretin and TonB N terminus short domain (STN)

(58-103)

Bacterial type II/III secretion system short domain (Secretin_N)

(131-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

70.938

98.202

0.697
  comQ Acinetobacter baylyi ADP1

42.171

100

0.454
  pilQ Acinetobacter baumannii strain A118

42.026

100

0.438
  pilQ Acinetobacter baumannii D1279779

42.026

100

0.438
  pilQ Vibrio campbellii strain DS40M4

44.917

95.056

0.427
  pilQ Legionella pneumophila strain Lp02

45

94.382

0.425
  pilQ Legionella pneumophila strain ERS1305867

45

94.382

0.425
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

44.498

93.933

0.418
  pilQ Vibrio cholerae strain A1552

44.498

93.933

0.418
  pilQ Neisseria meningitidis M1080

35.991

100

0.375
  pilQ Neisseria meningitidis MC58

35.991

100

0.375
  pilQ Neisseria gonorrhoeae strain FA1090

35.637

100

0.371

Multiple sequence alignment