Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EXW39_RS11050 Genome accession   NZ_CP036064
Coordinates   2172631..2172969 (+) Length   112 a.a.
NCBI ID   WP_002141572.1    Uniprot ID   A0A366GBI4
Organism   Bacillus mycoides strain JAS06/3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2159946..2172969 2172631..2172969 within 0


Gene organization within MGE regions


Location: 2159946..2172969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW39_RS10970 - 2159946..2160116 (+) 171 WP_097855281.1 hypothetical protein -
  EXW39_RS10975 (EXW39_11170) - 2160144..2160626 (+) 483 WP_197210001.1 ArpU family phage packaging/lysis transcriptional regulator -
  EXW39_RS10980 (EXW39_11175) - 2160626..2161168 (+) 543 WP_215591185.1 site-specific integrase -
  EXW39_RS10985 (EXW39_11180) - 2161274..2162413 (-) 1140 WP_215591186.1 Ig-like domain-containing protein -
  EXW39_RS10990 (EXW39_11185) - 2163071..2163304 (+) 234 WP_215591187.1 hemolysin XhlA family protein -
  EXW39_RS10995 (EXW39_11190) - 2163723..2164046 (-) 324 WP_215591188.1 WGxxGxxG family protein -
  EXW39_RS11000 (EXW39_11195) - 2164392..2164907 (+) 516 WP_000512143.1 DUF3231 family protein -
  EXW39_RS11005 - 2165477..2165644 (+) 168 WP_044441988.1 hypothetical protein -
  EXW39_RS11010 (EXW39_11200) - 2165703..2166137 (+) 435 WP_215591189.1 hypothetical protein -
  EXW39_RS11015 (EXW39_11205) - 2166134..2166473 (+) 340 Protein_2103 HNH endonuclease -
  EXW39_RS11020 (EXW39_11210) - 2166588..2167277 (-) 690 Protein_2104 helix-turn-helix domain-containing protein -
  EXW39_RS11025 (EXW39_11215) - 2167899..2168663 (-) 765 WP_215591190.1 hypothetical protein -
  EXW39_RS11030 (EXW39_11220) - 2168773..2169420 (+) 648 WP_002065130.1 HD domain-containing protein -
  EXW39_RS11035 (EXW39_11225) - 2169417..2171312 (+) 1896 WP_002127139.1 ABC-F family ATP-binding cassette domain-containing protein -
  EXW39_RS11040 (EXW39_11230) - 2171388..2172119 (+) 732 WP_215591191.1 Bax inhibitor-1/YccA family protein -
  EXW39_RS11045 (EXW39_11235) - 2172215..2172469 (+) 255 WP_002012563.1 DUF4318 domain-containing protein -
  EXW39_RS11050 (EXW39_11240) ssbA 2172631..2172969 (+) 339 WP_002141572.1 single-stranded DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12909.70 Da        Isoelectric Point: 9.1002

>NTDB_id=346383 EXW39_RS11050 WP_002141572.1 2172631..2172969(+) (ssbA) [Bacillus mycoides strain JAS06/3]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRVYRTEVLIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=346383 EXW39_RS11050 WP_002141572.1 2172631..2172969(+) (ssbA) [Bacillus mycoides strain JAS06/3]
ATGATGAATCGGGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGTGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAACAGCAAGTAGATTTTATTAATTGTGTTGTAT
GGAGAAGGTCGGCTGAAAATGTAACAGAATATTGTACGAAAGGCTCACTTGTTGGGATTACAGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAGTATATAGAACTGAAGTTCTGATTGAGAGTATTACATTTCTGGAGAGAAGGAG
GGAGGGTGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366GBI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.491

94.643

0.554
  ssb Latilactobacillus sakei subsp. sakei 23K

50.42

100

0.536
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.442

100

0.509
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

98.214

0.429
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

93.75

0.42
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

98.214

0.42
  ssbA Streptococcus mutans UA159

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae D39

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae R6

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis SK321

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

98.214

0.402

Multiple sequence alignment