Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EXW51_RS10915 Genome accession   NZ_CP036043
Coordinates   2071250..2071588 (+) Length   112 a.a.
NCBI ID   WP_215574894.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN58/4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2066250..2076588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW51_RS10890 (EXW51_11105) - 2066645..2067283 (-) 639 WP_215574892.1 hypothetical protein -
  EXW51_RS10895 (EXW51_11110) - 2067393..2068040 (+) 648 WP_002065130.1 HD domain-containing protein -
  EXW51_RS10900 (EXW51_11115) - 2068037..2069932 (+) 1896 WP_016094154.1 ABC-F family ATP-binding cassette domain-containing protein -
  EXW51_RS10905 (EXW51_11120) - 2070008..2070739 (+) 732 WP_002127140.1 Bax inhibitor-1/YccA family protein -
  EXW51_RS10910 (EXW51_11125) - 2070834..2071088 (+) 255 WP_215574893.1 DUF4318 domain-containing protein -
  EXW51_RS10915 (EXW51_11130) ssb 2071250..2071588 (+) 339 WP_215574894.1 single-stranded DNA-binding protein Machinery gene
  EXW51_RS10920 (EXW51_11135) - 2071744..2072871 (+) 1128 WP_215574895.1 conserved virulence factor C family protein -
  EXW51_RS10925 (EXW51_11140) - 2072875..2073258 (+) 384 WP_044441980.1 thiol-disulfide oxidoreductase DCC family protein -
  EXW51_RS10930 (EXW51_11145) - 2073341..2073775 (+) 435 WP_002012568.1 BrxA/BrxB family bacilliredoxin -
  EXW51_RS10935 (EXW51_11150) - 2073825..2074601 (+) 777 WP_063219648.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12881.69 Da        Isoelectric Point: 9.0926

>NTDB_id=346181 EXW51_RS10915 WP_215574894.1 2071250..2071588(+) (ssb) [Bacillus mycoides strain BPN58/4]
MMNRVVLIGRLTKEPELYYTKQGVAYARVCVAVNRGFRNSLGEQQVDFINCLVWRKSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRIYRTEVVIESITFLERRREGASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=346181 EXW51_RS10915 WP_215574894.1 2071250..2071588(+) (ssb) [Bacillus mycoides strain BPN58/4]
ATGATGAATCGAGTTGTATTAATAGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAGCAAGGCGTAGCTTATGC
ACGAGTATGTGTTGCGGTAAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAACAAGTAGATTTTATTAATTGTCTCGTAT
GGAGAAAATCGGCTGAGAATGTAACTGAATATTGTACGAAAGGGTCACTTGTTGGGATTACCGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACATTTTTGGAGAGAAGGAG
GGAGGGAGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

50.42

100

0.536
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.66

94.643

0.527
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.442

100

0.509
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

93.75

0.429
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.818

98.214

0.411
  ssbA Streptococcus mutans UA159

40

98.214

0.393
  ssbB/cilA Streptococcus mitis NCTC 12261

40

98.214

0.393
  ssbB/cilA Streptococcus pneumoniae TIGR4

40

98.214

0.393
  ssbB/cilA Streptococcus pneumoniae D39

39.091

98.214

0.384
  ssbB/cilA Streptococcus pneumoniae R6

39.091

98.214

0.384
  ssbB/cilA Streptococcus mitis SK321

39.091

98.214

0.384
  ssbB/cilA Streptococcus pneumoniae Rx1

39.091

98.214

0.384

Multiple sequence alignment