Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | GFD20_RS19225 | Genome accession | NZ_CP045768 |
| Coordinates | 4198323..4198787 (-) | Length | 154 a.a. |
| NCBI ID | WP_023129290.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain CFSAN084950 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4193323..4203787
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFD20_RS19210 (GFD20_19210) | nadC | 4195823..4196671 (+) | 849 | WP_003110344.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| GFD20_RS19220 (GFD20_19220) | - | 4196852..4198165 (-) | 1314 | WP_228518684.1 | O-antigen ligase family protein | - |
| GFD20_RS19225 (GFD20_19225) | pilA/pilAI | 4198323..4198787 (-) | 465 | WP_023129290.1 | pilin | Machinery gene |
| GFD20_RS19230 (GFD20_19230) | pilB | 4199018..4200718 (+) | 1701 | WP_003107297.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GFD20_RS19235 (GFD20_19235) | pilC | 4200722..4201939 (+) | 1218 | WP_003161763.1 | type II secretion system F family protein | Machinery gene |
| GFD20_RS19240 (GFD20_19240) | pilD | 4201940..4202812 (+) | 873 | WP_023084740.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| GFD20_RS19245 (GFD20_19245) | coaE | 4202809..4203420 (+) | 612 | WP_003112838.1 | dephospho-CoA kinase | - |
| GFD20_RS19250 (GFD20_19250) | yacG | 4203417..4203617 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16148.47 Da Isoelectric Point: 8.9986
>NTDB_id=345892 GFD20_RS19225 WP_023129290.1 4198323..4198787(-) (pilA/pilAI) [Pseudomonas aeruginosa strain CFSAN084950]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSNDSPKNDEYDLGFTS
STLLTGDGKGQIKIDKADTATPEISGTLGRSSGKGIAGAVITVKRDDKGVWTCGITGSPTNWKANYAPANCPKS
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSNDSPKNDEYDLGFTS
STLLTGDGKGQIKIDKADTATPEISGTLGRSSGKGIAGAVITVKRDDKGVWTCGITGSPTNWKANYAPANCPKS
Nucleotide
Download Length: 465 bp
>NTDB_id=345892 GFD20_RS19225 WP_023129290.1 4198323..4198787(-) (pilA/pilAI) [Pseudomonas aeruginosa strain CFSAN084950]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTCGTTTCCAACGATTCTCCCAAAAACGATGAGTATGATCTTGGCTTTACCAGT
TCTACTCTGCTTACCGGTGACGGTAAGGGGCAGATCAAGATTGACAAAGCTGATACCGCAACTCCGGAGATTTCTGGTAC
CTTGGGCCGCTCTTCTGGTAAAGGTATTGCTGGCGCTGTCATCACTGTCAAGCGTGATGATAAAGGAGTATGGACCTGCG
GCATCACTGGTTCGCCGACCAACTGGAAAGCCAACTACGCTCCGGCCAATTGCCCGAAATCCTAA
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGCTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTCGTTTCCAACGATTCTCCCAAAAACGATGAGTATGATCTTGGCTTTACCAGT
TCTACTCTGCTTACCGGTGACGGTAAGGGGCAGATCAAGATTGACAAAGCTGATACCGCAACTCCGGAGATTTCTGGTAC
CTTGGGCCGCTCTTCTGGTAAAGGTATTGCTGGCGCTGTCATCACTGTCAAGCGTGATGATAAAGGAGTATGGACCTGCG
GCATCACTGGTTCGCCGACCAACTGGAAAGCCAACTACGCTCCGGCCAATTGCCCGAAATCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
44.516 |
100 |
0.448 |
| pilA | Acinetobacter baumannii strain A118 |
42.857 |
100 |
0.429 |
| pilA | Pseudomonas aeruginosa PAK |
41.139 |
100 |
0.422 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.059 |
100 |
0.409 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.073 |
98.052 |
0.383 |
| pilA | Vibrio cholerae strain A1552 |
39.073 |
98.052 |
0.383 |
| pilA | Vibrio cholerae C6706 |
39.073 |
98.052 |
0.383 |
| pilA2 | Legionella pneumophila str. Paris |
37.838 |
96.104 |
0.364 |