Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EXW61_RS15825 Genome accession   NZ_CP036004
Coordinates   3036416..3036754 (-) Length   112 a.a.
NCBI ID   WP_002012564.1    Uniprot ID   J8I4L2
Organism   Bacillus mycoides strain BPN37/2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3031416..3041754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW61_RS15800 (EXW61_16085) argS 3031418..3033106 (-) 1689 WP_215598795.1 arginine--tRNA ligase -
  EXW61_RS15805 (EXW61_16090) - 3033403..3034179 (-) 777 WP_215598796.1 class I SAM-dependent methyltransferase -
  EXW61_RS15810 (EXW61_16095) - 3034229..3034663 (-) 435 WP_002012568.1 BrxA/BrxB family bacilliredoxin -
  EXW61_RS15815 (EXW61_16100) - 3034746..3035129 (-) 384 WP_215598797.1 thiol-disulfide oxidoreductase DCC family protein -
  EXW61_RS15820 (EXW61_16105) - 3035133..3036260 (-) 1128 WP_002012566.1 conserved virulence factor C family protein -
  EXW61_RS15825 (EXW61_16110) ssbA 3036416..3036754 (-) 339 WP_002012564.1 single-stranded DNA-binding protein Machinery gene
  EXW61_RS15830 (EXW61_16115) - 3036916..3037170 (-) 255 WP_002012563.1 DUF4318 domain-containing protein -
  EXW61_RS15835 (EXW61_16120) - 3037265..3037996 (-) 732 WP_002127140.1 Bax inhibitor-1/YccA family protein -
  EXW61_RS15840 (EXW61_16125) - 3038072..3039967 (-) 1896 WP_002127139.1 ABC-F family ATP-binding cassette domain-containing protein -
  EXW61_RS15845 (EXW61_16130) - 3039964..3040182 (-) 219 Protein_3176 phosphohydrolase -
  EXW61_RS15850 (EXW61_16135) - 3040326..3041457 (-) 1132 Protein_3177 RNA-guided endonuclease InsQ/TnpB family protein -

Sequence

Protein


Download         Length: 112 a.a.        Molecular weight: 12966.75 Da        Isoelectric Point: 9.1002

>NTDB_id=345774 EXW61_RS15825 WP_002012564.1 3036416..3036754(-) (ssbA) [Bacillus mycoides strain BPN37/2]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRRSAENVTEYCTKGSLVGITGRIHTS
NYDDEQGKRVYRTEVLIENITFLERRRESASQ

Nucleotide


Download         Length: 339 bp        

>NTDB_id=345774 EXW61_RS15825 WP_002012564.1 3036416..3036754(-) (ssbA) [Bacillus mycoides strain BPN37/2]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGTGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGTTTTCGAAATAGTTTAGGTGAGCAACAAGTAGATTTTATTAATTGTGTTGTAT
GGAGAAGGTCGGCTGAAAATGTAACAGAATATTGTACGAAAGGCTCACTTGTTGGGATTACAGGGCGTATTCATACGAGT
AATTACGATGATGAACAAGGAAAGAGAGTATATAGAACTGAAGTTCTGATTGAGAATATTACATTTTTAGAGAGAAGGCG
GGAGAGTGCATCGCAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8I4L2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

94.643

0.545
  ssb Latilactobacillus sakei subsp. sakei 23K

53.774

94.643

0.509
  ssbB Bacillus subtilis subsp. subtilis str. 168

50.442

100

0.509
  ssbB Lactococcus lactis subsp. cremoris KW2

43.86

100

0.446
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.727

98.214

0.42
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

98.214

0.42
  ssbB/cilA Streptococcus pneumoniae D39

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

98.214

0.411
  ssbB/cilA Streptococcus pneumoniae R6

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis SK321

41.818

98.214

0.411
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

98.214

0.402
  ssbA Streptococcus mutans UA159

40.909

98.214

0.402

Multiple sequence alignment