Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | EPB55_RS06730 | Genome accession | NZ_CP035731 |
| Coordinates | 1329908..1330333 (+) | Length | 141 a.a. |
| NCBI ID | WP_072608924.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain 2142-77 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1324908..1335333
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EPB55_RS06715 | pdhR | 1326977..1327744 (-) | 768 | WP_011079554.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| EPB55_RS06720 | ampD | 1328133..1328705 (-) | 573 | WP_103276771.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| EPB55_RS06725 | nadC | 1328798..1329685 (+) | 888 | WP_103276770.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| EPB55_RS06730 | pilA | 1329908..1330333 (+) | 426 | WP_072608924.1 | pilin | Machinery gene |
| EPB55_RS06735 | pilB | 1330338..1332026 (+) | 1689 | WP_080538712.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EPB55_RS06740 | pilC | 1332075..1333301 (+) | 1227 | WP_085761331.1 | type II secretion system F family protein | Machinery gene |
| EPB55_RS06745 | pilD | 1333395..1334264 (+) | 870 | WP_011079548.1 | A24 family peptidase | Machinery gene |
| EPB55_RS06750 | coaE | 1334266..1334874 (+) | 609 | WP_039554617.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14704.89 Da Isoelectric Point: 9.4539
>NTDB_id=344100 EPB55_RS06730 WP_072608924.1 1329908..1330333(+) (pilA) [Vibrio vulnificus strain 2142-77]
MKKLNKTKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAATALASITGHRTNVETYVLENGSFPSTSGALAIPT
SPIGVITYENPTSAAGDIKFSFNSSGVSPDIVSKHVTLSRTSAGGWSCATDVATDLKPKGC
MKKLNKTKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAATALASITGHRTNVETYVLENGSFPSTSGALAIPT
SPIGVITYENPTSAAGDIKFSFNSSGVSPDIVSKHVTLSRTSAGGWSCATDVATDLKPKGC
Nucleotide
Download Length: 426 bp
>NTDB_id=344100 EPB55_RS06730 WP_072608924.1 1329908..1330333(+) (pilA) [Vibrio vulnificus strain 2142-77]
ATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTGGTGGCGGTAATTGGCGT
GCTCGCAGCAATTGCAGTACCCCAGTATCAAAAATACGTTGCTAAAAGTGAAGCCGCAACCGCTCTAGCTTCGATAACAG
GTCACCGAACTAACGTTGAAACATATGTACTAGAAAATGGTTCTTTCCCATCAACTTCAGGCGCTCTAGCAATACCTACT
TCTCCTATCGGAGTTATTACATACGAAAACCCTACTAGTGCAGCTGGTGATATTAAATTTAGTTTCAACTCATCTGGGGT
TAGCCCAGACATCGTATCGAAACACGTGACACTTTCAAGAACTTCTGCTGGTGGTTGGTCATGTGCAACTGATGTGGCAA
CAGATCTAAAACCTAAAGGCTGTTAA
ATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTGGTGGCGGTAATTGGCGT
GCTCGCAGCAATTGCAGTACCCCAGTATCAAAAATACGTTGCTAAAAGTGAAGCCGCAACCGCTCTAGCTTCGATAACAG
GTCACCGAACTAACGTTGAAACATATGTACTAGAAAATGGTTCTTTCCCATCAACTTCAGGCGCTCTAGCAATACCTACT
TCTCCTATCGGAGTTATTACATACGAAAACCCTACTAGTGCAGCTGGTGATATTAAATTTAGTTTCAACTCATCTGGGGT
TAGCCCAGACATCGTATCGAAACACGTGACACTTTCAAGAACTTCTGCTGGTGGTTGGTCATGTGCAACTGATGTGGCAA
CAGATCTAAAACCTAAAGGCTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
46.358 |
100 |
0.496 |
| pilA | Vibrio cholerae C6706 |
46.358 |
100 |
0.496 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.358 |
100 |
0.496 |
| pilA | Pseudomonas aeruginosa PAK |
43.537 |
100 |
0.454 |
| pilA | Acinetobacter baumannii strain A118 |
43.704 |
95.745 |
0.418 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.143 |
99.291 |
0.418 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.537 |
95.035 |
0.404 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.416 |
97.163 |
0.383 |