Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EPB55_RS06740 Genome accession   NZ_CP035731
Coordinates   1332075..1333301 (+) Length   408 a.a.
NCBI ID   WP_085761331.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2142-77     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1327075..1338301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS06720 ampD 1328133..1328705 (-) 573 WP_103276771.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  EPB55_RS06725 nadC 1328798..1329685 (+) 888 WP_103276770.1 carboxylating nicotinate-nucleotide diphosphorylase -
  EPB55_RS06730 pilA 1329908..1330333 (+) 426 WP_072608924.1 pilin Machinery gene
  EPB55_RS06735 pilB 1330338..1332026 (+) 1689 WP_080538712.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EPB55_RS06740 pilC 1332075..1333301 (+) 1227 WP_085761331.1 type II secretion system F family protein Machinery gene
  EPB55_RS06745 pilD 1333395..1334264 (+) 870 WP_011079548.1 A24 family peptidase Machinery gene
  EPB55_RS06750 coaE 1334266..1334874 (+) 609 WP_039554617.1 dephospho-CoA kinase -
  EPB55_RS06755 zapD 1334907..1335647 (+) 741 WP_011079546.1 cell division protein ZapD -
  EPB55_RS06760 yacG 1335710..1335904 (+) 195 WP_026060801.1 DNA gyrase inhibitor YacG -
  EPB55_RS06765 rplS 1336113..1336466 (-) 354 WP_011079544.1 50S ribosomal protein L19 -
  EPB55_RS06770 trmD 1336508..1337257 (-) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  EPB55_RS06775 rimM 1337285..1337833 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  EPB55_RS06780 rpsP 1337849..1338097 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45263.52 Da        Isoelectric Point: 10.3355

>NTDB_id=344102 EPB55_RS06740 WP_085761331.1 1332075..1333301(+) (pilC) [Vibrio vulnificus strain 2142-77]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSRKSPAFRLKLSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=344102 EPB55_RS06740 WP_085761331.1 1332075..1333301(+) (pilC) [Vibrio vulnificus strain 2142-77]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTTTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAAAAATCCA
GTGTGTCAGTTTTCACGAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTTAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCGGGTACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGTCTCGCTTTTTATCGAGAA
AAAAACGAGCAGTTGCGAGCAAAAGTGATCAAAGCATTAATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGTGTCTC
TTATTTAATGCTGACTCAGGTTATTCCCGAATTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAGGCCTACAGCAGTTGGTTTTTCATTACGCTGTTCAGTGCCATTTATTTA
CTGCGCGGTCTAAGTCGCAAGTCTCCCGCATTTCGGCTTAAACTCTCGCGACTAAGCTTGAAAATTCCAGTGATTGGTGG
GGTCTTATCTAAAGCGGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGCTTCAGTGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTACATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCTGCC
GGGATGCCAATGTACATCGCCATGCGCAACAGCCTTGCTTTCCCAGAATTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTGAACAAGATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.25

98.039

0.767
  pilC Vibrio campbellii strain DS40M4

74.813

98.284

0.735
  pilC Pseudomonas stutzeri DSM 10701

41.337

99.02

0.409
  pilG Neisseria gonorrhoeae MS11

40.796

98.529

0.402
  pilC Acinetobacter baumannii D1279779

39.756

100

0.4
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4
  pilC Acinetobacter baylyi ADP1

40.602

97.794

0.397
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397

Multiple sequence alignment