Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ETT67_RS06060 Genome accession   NZ_CP035432
Coordinates   1182575..1182994 (-) Length   139 a.a.
NCBI ID   WP_021340323.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1152866..1195378 1182575..1182994 within 0


Gene organization within MGE regions


Location: 1152866..1195378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT67_RS05855 (ETT67_05845) prx 1152866..1153048 (-) 183 WP_032463717.1 hypothetical protein Regulator
  ETT67_RS05860 (ETT67_05850) spel 1153163..1153951 (-) 789 WP_021340779.1 streptococcal pyrogenic exotoxin SpeL -
  ETT67_RS05865 (ETT67_05855) spem 1154233..1154946 (-) 714 WP_136059319.1 streptococcal pyrogenic exotoxin SpeM -
  ETT67_RS05870 (ETT67_05860) - 1155329..1155889 (-) 561 WP_011018106.1 GNAT family N-acetyltransferase -
  ETT67_RS05875 (ETT67_05865) - 1155922..1156086 (-) 165 WP_021340366.1 hypothetical protein -
  ETT67_RS05880 (ETT67_05870) - 1156235..1156876 (-) 642 Protein_1092 CHAP domain-containing protein -
  ETT67_RS05885 (ETT67_05875) - 1156989..1157681 (-) 693 WP_136059320.1 AP2 domain-containing protein -
  ETT67_RS05890 (ETT67_05880) - 1157917..1158471 (-) 555 Protein_1094 glycoside hydrolase family 73 protein -
  ETT67_RS05895 (ETT67_05885) - 1158582..1158767 (-) 186 WP_136059321.1 holin -
  ETT67_RS05900 (ETT67_05890) - 1158764..1159060 (-) 297 WP_002990012.1 hypothetical protein -
  ETT67_RS05905 (ETT67_05895) - 1159070..1159702 (-) 633 WP_136059322.1 hypothetical protein -
  ETT67_RS05910 (ETT67_05900) - 1159705..1160133 (-) 429 WP_111688452.1 DUF1617 family protein -
  ETT67_RS05915 (ETT67_05905) - 1160145..1162031 (-) 1887 WP_076639305.1 gp58-like family protein -
  ETT67_RS05920 (ETT67_05910) hylP 1162046..1163059 (-) 1014 WP_032463712.1 hyaluronidase HylP -
  ETT67_RS05925 (ETT67_05915) - 1163059..1165107 (-) 2049 WP_136059323.1 phage tail spike protein -
  ETT67_RS05930 (ETT67_05920) - 1165104..1165883 (-) 780 WP_032461961.1 distal tail protein Dit -
  ETT67_RS05935 (ETT67_05925) - 1165915..1169550 (-) 3636 WP_111681177.1 tape measure protein -
  ETT67_RS05940 (ETT67_05930) - 1169565..1169894 (-) 330 WP_136059324.1 hypothetical protein -
  ETT67_RS05945 (ETT67_05935) - 1169936..1170295 (-) 360 WP_023605140.1 tail assembly chaperone -
  ETT67_RS05950 (ETT67_05940) - 1170355..1170924 (-) 570 WP_080473792.1 phage major tail protein, TP901-1 family -
  ETT67_RS05955 (ETT67_05945) - 1170979..1171368 (-) 390 WP_111681179.1 phage capsid protein -
  ETT67_RS05960 (ETT67_05950) - 1171365..1171730 (-) 366 WP_111681180.1 HK97-gp10 family putative phage morphogenesis protein -
  ETT67_RS05965 (ETT67_05955) - 1171711..1172019 (-) 309 WP_111681181.1 hypothetical protein -
  ETT67_RS05970 (ETT67_05960) - 1172016..1172369 (-) 354 WP_111681182.1 phage head-tail connector protein -
  ETT67_RS05975 (ETT67_05965) - 1172383..1172625 (-) 243 WP_111681183.1 HeH/LEM domain-containing protein -
  ETT67_RS05980 (ETT67_05970) - 1172635..1173714 (-) 1080 WP_111681184.1 major capsid protein -
  ETT67_RS05985 (ETT67_05975) - 1173717..1174097 (-) 381 WP_011017859.1 hypothetical protein -
  ETT67_RS05990 (ETT67_05980) - 1174107..1174640 (-) 534 WP_002988401.1 DUF4355 domain-containing protein -
  ETT67_RS05995 (ETT67_05985) - 1174784..1175050 (-) 267 WP_023611362.1 hypothetical protein -
  ETT67_RS06005 (ETT67_05995) - 1175436..1175621 (-) 186 WP_002988389.1 hypothetical protein -
  ETT67_RS06010 (ETT67_06000) - 1175625..1177187 (-) 1563 WP_002988386.1 phage head morphogenesis protein -
  ETT67_RS06015 (ETT67_06005) - 1177168..1178670 (-) 1503 WP_002984369.1 phage portal protein -
  ETT67_RS06020 (ETT67_06010) - 1178682..1179989 (-) 1308 WP_136059325.1 PBSX family phage terminase large subunit -
  ETT67_RS06025 (ETT67_06015) - 1179967..1180419 (-) 453 WP_111688446.1 terminase small subunit -
  ETT67_RS06030 (ETT67_06020) - 1180516..1180929 (-) 414 WP_002983418.1 transcriptional regulator -
  ETT67_RS06035 (ETT67_06025) - 1180926..1181117 (-) 192 WP_136059326.1 hypothetical protein -
  ETT67_RS06040 (ETT67_06030) - 1181120..1181404 (-) 285 WP_136059327.1 hypothetical protein -
  ETT67_RS09225 - 1181401..1181571 (-) 171 WP_002995952.1 hypothetical protein -
  ETT67_RS06045 (ETT67_06035) - 1181568..1181804 (-) 237 WP_002995955.1 DUF3310 domain-containing protein -
  ETT67_RS06050 (ETT67_06040) - 1181926..1182366 (-) 441 WP_011285574.1 RusA family crossover junction endodeoxyribonuclease -
  ETT67_RS06055 (ETT67_06045) - 1182366..1182569 (-) 204 WP_011106686.1 hypothetical protein -
  ETT67_RS06060 (ETT67_06050) ssbA 1182575..1182994 (-) 420 WP_021340323.1 single-stranded DNA-binding protein Machinery gene
  ETT67_RS06065 (ETT67_06055) - 1182987..1183661 (-) 675 WP_021340879.1 ERF family protein -
  ETT67_RS06070 (ETT67_06060) - 1183662..1184144 (-) 483 WP_021341163.1 siphovirus Gp157 family protein -
  ETT67_RS06075 (ETT67_06065) - 1184166..1184420 (-) 255 WP_136059328.1 hypothetical protein -
  ETT67_RS06080 (ETT67_06070) - 1184401..1184757 (-) 357 WP_021341157.1 HTH domain-containing protein -
  ETT67_RS09230 - 1184768..1184905 (-) 138 WP_011018145.1 hypothetical protein -
  ETT67_RS06085 (ETT67_06075) - 1184896..1185678 (-) 783 WP_021341158.1 ATP-binding protein -
  ETT67_RS06090 (ETT67_06080) - 1185665..1186468 (-) 804 WP_021340639.1 DnaD domain protein -
  ETT67_RS06095 (ETT67_06085) - 1186584..1186898 (-) 315 WP_136059329.1 hypothetical protein -
  ETT67_RS06100 (ETT67_06090) - 1186954..1187334 (+) 381 WP_000568478.1 hypothetical protein -
  ETT67_RS06105 (ETT67_06095) - 1187324..1187596 (-) 273 WP_000370473.1 hypothetical protein -
  ETT67_RS06110 (ETT67_06100) - 1187769..1187948 (-) 180 WP_012560974.1 hypothetical protein -
  ETT67_RS09460 - 1188079..1188213 (-) 135 WP_012560975.1 hypothetical protein -
  ETT67_RS06115 (ETT67_06105) - 1188215..1188526 (-) 312 WP_014411880.1 hypothetical protein -
  ETT67_RS06120 (ETT67_06110) - 1188605..1188790 (-) 186 WP_046176892.1 helix-turn-helix domain-containing protein -
  ETT67_RS06125 (ETT67_06115) - 1188934..1189248 (+) 315 WP_032461901.1 hypothetical protein -
  ETT67_RS06130 (ETT67_06120) - 1189223..1189573 (-) 351 WP_110410816.1 hypothetical protein -
  ETT67_RS06135 (ETT67_06125) - 1189577..1190299 (-) 723 WP_032460391.1 phage antirepressor KilAC domain-containing protein -
  ETT67_RS06140 (ETT67_06130) - 1190350..1190577 (-) 228 WP_002990088.1 hypothetical protein -
  ETT67_RS06145 (ETT67_06135) - 1190737..1191495 (+) 759 WP_136059330.1 S24 family peptidase -
  ETT67_RS06150 (ETT67_06140) - 1191530..1192210 (+) 681 WP_002990092.1 hypothetical protein -
  ETT67_RS06155 (ETT67_06145) - 1192347..1193489 (+) 1143 WP_003051793.1 site-specific integrase -
  ETT67_RS06160 (ETT67_06150) - 1193579..1193854 (-) 276 WP_002983920.1 HU family DNA-binding protein -
  ETT67_RS06165 (ETT67_06155) - 1193953..1194540 (-) 588 WP_002989129.1 YpmS family protein -
  ETT67_RS06170 (ETT67_06160) - 1194518..1195360 (-) 843 WP_002992620.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15611.30 Da        Isoelectric Point: 4.6702

>NTDB_id=341280 ETT67_RS06060 WP_021340323.1 1182575..1182994(-) (ssbA) [Streptococcus pyogenes strain emm11]
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAESFQMLESCNQQSGQGNSSQNDNSQPFGNSNPMDISDDDLPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=341280 ETT67_RS06060 WP_021340323.1 1182575..1182994(-) (ssbA) [Streptococcus pyogenes strain emm11]
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATCTGGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACAGGTCGTATCCAGACACGC
AACTACGAAAACCAACAAGGTCAACGCGTATATGTAACAGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTTGCAA
TCAACAATCTGGTCAAGGTAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATATTTCAG
ATGATGATCTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.857

100

0.691
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.647
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.885

100

0.439
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.885

100

0.439
  ssbB/cilA Streptococcus pneumoniae Rx1

43.165

100

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

43.165

100

0.432
  ssbB/cilA Streptococcus pneumoniae D39

43.165

100

0.432
  ssbB/cilA Streptococcus pneumoniae R6

43.165

100

0.432
  ssbB/cilA Streptococcus mitis SK321

43.165

100

0.432
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.769

74.82

0.417
  ssbA Streptococcus mutans UA159

41.007

100

0.41
  ssb Vibrio cholerae strain A1552

30.636

100

0.381

Multiple sequence alignment