Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ETT72_RS06395 Genome accession   NZ_CP035427
Coordinates   1221152..1221571 (-) Length   139 a.a.
NCBI ID   WP_032460176.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain emm74     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1216152..1226571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETT72_RS06335 (ETT72_06330) - 1216926..1217366 (-) 441 WP_002990052.1 ArpU family phage packaging/lysis transcriptional regulator -
  ETT72_RS06340 (ETT72_06335) - 1217737..1218030 (-) 294 WP_032460172.1 hypothetical protein -
  ETT72_RS06345 (ETT72_06340) - 1218027..1218212 (-) 186 WP_011054812.1 hypothetical protein -
  ETT72_RS10060 - 1218321..1218425 (-) 105 Protein_1197 SAM-dependent methyltransferase -
  ETT72_RS06355 (ETT72_06350) - 1218428..1218763 (-) 336 WP_011054813.1 hypothetical protein -
  ETT72_RS06360 (ETT72_06355) - 1218766..1219050 (-) 285 WP_032460174.1 hypothetical protein -
  ETT72_RS09630 - 1219047..1219217 (-) 171 WP_164977039.1 hypothetical protein -
  ETT72_RS06365 (ETT72_06360) - 1219214..1219627 (-) 414 WP_011054815.1 YopX family protein -
  ETT72_RS06370 (ETT72_06365) - 1219624..1219908 (-) 285 WP_011018137.1 DUF3310 domain-containing protein -
  ETT72_RS09935 (ETT72_06370) - 1219902..1220153 (-) 252 WP_011106665.1 hypothetical protein -
  ETT72_RS06380 (ETT72_06375) - 1220150..1220506 (-) 357 WP_011018138.1 hypothetical protein -
  ETT72_RS06385 (ETT72_06380) - 1220503..1220943 (-) 441 WP_032460175.1 RusA family crossover junction endodeoxyribonuclease -
  ETT72_RS06390 (ETT72_06385) - 1220943..1221146 (-) 204 WP_011106686.1 hypothetical protein -
  ETT72_RS06395 (ETT72_06390) ssbA 1221152..1221571 (-) 420 WP_032460176.1 single-stranded DNA-binding protein Machinery gene
  ETT72_RS06400 (ETT72_06395) - 1221564..1222238 (-) 675 WP_023078248.1 ERF family protein -
  ETT72_RS06405 (ETT72_06400) - 1222239..1222721 (-) 483 WP_021341163.1 siphovirus Gp157 family protein -
  ETT72_RS06410 (ETT72_06405) - 1222742..1222996 (-) 255 WP_032460177.1 hypothetical protein -
  ETT72_RS06415 (ETT72_06410) - 1222977..1223333 (-) 357 WP_021341157.1 HTH domain-containing protein -
  ETT72_RS09635 - 1223344..1223481 (-) 138 WP_011018145.1 hypothetical protein -
  ETT72_RS06420 (ETT72_06415) - 1223472..1224254 (-) 783 WP_032460178.1 ATP-binding protein -
  ETT72_RS06425 (ETT72_06420) - 1224241..1225017 (-) 777 WP_032460179.1 DnaD domain protein -
  ETT72_RS06430 (ETT72_06425) - 1225111..1225248 (-) 138 WP_011017881.1 hypothetical protein -
  ETT72_RS06435 (ETT72_06430) - 1225250..1225417 (-) 168 Protein_1216 excisionase -
  ETT72_RS06440 (ETT72_06435) - 1225530..1225889 (-) 360 WP_012560976.1 hypothetical protein -
  ETT72_RS06445 (ETT72_06440) - 1225965..1226276 (-) 312 WP_014411880.1 hypothetical protein -
  ETT72_RS06450 (ETT72_06445) - 1226355..1226540 (-) 186 WP_046176892.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15664.30 Da        Isoelectric Point: 4.6952

>NTDB_id=341012 ETT72_RS06395 WP_032460176.1 1221152..1221571(-) (ssbA) [Streptococcus pyogenes strain emm74]
MINNVVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVAENFQMLESRNQQSGQGNSSQNDNSQPFGDSNPMDISDDDLPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=341012 ETT72_RS06395 WP_032460176.1 1221152..1221571(-) (ssbA) [Streptococcus pyogenes strain emm74]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAATTGTGTTATCT
GGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGAGAACTTCCAAATGTTGGAAAGTCGCAA
TCAACAATCTGGTCAAGGTAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCGATTCAAACCCAATGGATATTTCAG
ATGATGATCTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.429

100

0.698
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.698
  ssbB/cilA Streptococcus pneumoniae TIGR4

46.763

100

0.468
  ssbB/cilA Streptococcus pneumoniae Rx1

46.043

100

0.46
  ssbB/cilA Streptococcus mitis NCTC 12261

46.043

100

0.46
  ssbB/cilA Streptococcus pneumoniae D39

46.043

100

0.46
  ssbB/cilA Streptococcus pneumoniae R6

46.043

100

0.46
  ssbB/cilA Streptococcus mitis SK321

46.043

100

0.46
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.604

100

0.446
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.054

79.856

0.432
  ssbA Streptococcus mutans UA159

41.727

100

0.417
  ssb Vibrio cholerae strain A1552

30.636

100

0.381

Multiple sequence alignment