Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ETK61_RS20145 Genome accession   NZ_CP035406
Coordinates   3736814..3737155 (-) Length   113 a.a.
NCBI ID   WP_014481141.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103612     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3731814..3742155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS20130 (ETK61_20135) hepAB 3732054..3734822 (+) 2769 WP_041334773.1 DEAD/DEAH box helicase -
  ETK61_RS20135 (ETK61_20140) ywpJ 3734950..3735807 (-) 858 WP_128747262.1 phosphatase YwpJ -
  ETK61_RS20140 (ETK61_20145) glcR 3735813..3736589 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  ETK61_RS20145 (ETK61_20150) ssbB 3736814..3737155 (-) 342 WP_014481141.1 single-stranded DNA-binding protein SsbB Machinery gene
  ETK61_RS20150 (ETK61_20155) ywpG 3737232..3737614 (-) 383 Protein_3902 DynA interaction protein YwpG -
  ETK61_RS20155 (ETK61_20160) ywpF 3737789..3738199 (+) 411 WP_003227794.1 YwpF-like family protein -
  ETK61_RS20165 (ETK61_20170) - 3738351..3739598 (+) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  ETK61_RS20170 (ETK61_20175) - 3739600..3740064 (-) 465 Protein_3905 class A sortase -
  ETK61_RS23885 (ETK61_20180) - 3740051..3740440 (-) 390 WP_009968292.1 prealbumin-like fold domain-containing protein -
  ETK61_RS20180 (ETK61_20185) ywpD 3740324..3741160 (+) 837 WP_026113665.1 histidine kinase -
  ETK61_RS20185 (ETK61_20190) mscL 3741207..3741602 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  ETK61_RS20190 (ETK61_20195) fabZ 3741675..3742100 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12550.17 Da        Isoelectric Point: 6.9498

>NTDB_id=340593 ETK61_RS20145 WP_014481141.1 3736814..3737155(-) (ssbB) [Bacillus subtilis strain SRCM103612]
MFNQVMLVGRLTKDPDLRYTSTGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=340593 ETK61_RS20145 WP_014481141.1 3736814..3737155(-) (ssbB) [Bacillus subtilis strain SRCM103612]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCACCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment