Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ETA15_RS19210 Genome accession   NZ_CP035403
Coordinates   3609159..3609500 (-) Length   113 a.a.
NCBI ID   WP_017696582.1    Uniprot ID   A0AAX3RQL5
Organism   Bacillus subtilis strain SRCM103581     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3604159..3614500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS19190 (ETA15_19190) hepAB 3604401..3607169 (+) 2769 WP_129093470.1 DEAD/DEAH box helicase -
  ETA15_RS19200 (ETA15_19200) ywpJ 3607295..3608152 (-) 858 WP_017696583.1 phosphatase YwpJ -
  ETA15_RS19205 (ETA15_19205) glcR 3608158..3608934 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  ETA15_RS19210 (ETA15_19210) ssbB 3609159..3609500 (-) 342 WP_017696582.1 single-stranded DNA-binding protein SsbB Machinery gene
  ETA15_RS19215 (ETA15_19215) ywpG 3609577..3609960 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  ETA15_RS19220 (ETA15_19220) ywpF 3610135..3610545 (+) 411 WP_003227794.1 YwpF-like family protein -
  ETA15_RS19225 (ETA15_19225) - 3610685..3611077 (-) 393 Protein_3710 class A sortase -
  ETA15_RS22340 (ETA15_19230) - 3611064..3611429 (-) 366 WP_326068522.1 prealbumin-like fold domain-containing protein -
  ETA15_RS19235 (ETA15_19235) ywpD 3611337..3612173 (+) 837 WP_250622457.1 histidine kinase -
  ETA15_RS19240 (ETA15_19240) - 3612317..3613669 (+) 1353 WP_014478984.1 IS1182 family transposase -
  ETA15_RS19245 (ETA15_19245) mscL 3613798..3614193 (-) 396 WP_129093474.1 large conductance mechanosensitive channel protein MscL -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12461.12 Da        Isoelectric Point: 8.4694

>NTDB_id=340366 ETA15_RS19210 WP_017696582.1 3609159..3609500(-) (ssbB) [Bacillus subtilis strain SRCM103581]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTQVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=340366 ETA15_RS19210 WP_017696582.1 3609159..3609500(-) (ssbB) [Bacillus subtilis strain SRCM103581]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACACAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.208

93.805

0.593
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

93.805

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.34

93.805

0.416
  ssbA Streptococcus mutans UA159

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae D39

43.396

93.805

0.407
  ssbB/cilA Streptococcus pneumoniae R6

43.396

93.805

0.407
  ssbB/cilA Streptococcus mitis SK321

43.396

93.805

0.407
  ssbB Lactococcus lactis subsp. cremoris KW2

40.952

92.92

0.381

Multiple sequence alignment