Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ES969_RS19155 Genome accession   NZ_CP035402
Coordinates   3555485..3555826 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain SRCM103576     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3550485..3560826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES969_RS19140 (ES969_19140) hepAB 3550726..3553494 (+) 2769 WP_129134084.1 DEAD/DEAH box helicase -
  ES969_RS19145 (ES969_19145) ywpJ 3553622..3554479 (-) 858 WP_038427970.1 phosphatase YwpJ -
  ES969_RS19150 (ES969_19150) glcR 3554485..3555261 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  ES969_RS19155 (ES969_19155) ssbB 3555485..3555826 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  ES969_RS19160 (ES969_19160) ywpG 3555903..3556286 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  ES969_RS19165 (ES969_19165) ywpF 3556461..3556871 (+) 411 WP_014481144.1 YwpF-like family protein -
  ES969_RS19170 (ES969_19170) - 3557011..3557403 (-) 393 Protein_3695 class A sortase -
  ES969_RS22155 (ES969_19175) - 3557390..3557743 (-) 354 WP_250629031.1 prealbumin-like fold domain-containing protein -
  ES969_RS19180 (ES969_19180) ywpD 3557651..3558486 (+) 836 Protein_3697 histidine kinase -
  ES969_RS19185 (ES969_19185) mscL 3558534..3558929 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  ES969_RS19190 (ES969_19190) fabZ 3559002..3559427 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ES969_RS19195 (ES969_19195) rapD 3559619..3560683 (+) 1065 WP_014481149.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=340289 ES969_RS19155 WP_003227798.1 3555485..3555826(-) (ssbB) [Bacillus subtilis strain SRCM103576]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=340289 ES969_RS19155 WP_003227798.1 3555485..3555826(-) (ssbB) [Bacillus subtilis strain SRCM103576]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment