Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ETA18_RS19045 Genome accession   NZ_CP035400
Coordinates   3648662..3649003 (-) Length   113 a.a.
NCBI ID   WP_128993492.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103835     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3643662..3654003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA18_RS19025 (ETA18_19025) hepAB 3643904..3646672 (+) 2769 WP_014478200.1 DEAD/DEAH box helicase -
  ETA18_RS19035 (ETA18_19035) ywpJ 3646798..3647655 (-) 858 WP_072173789.1 phosphatase YwpJ -
  ETA18_RS19040 (ETA18_19040) glcR 3647661..3648437 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  ETA18_RS19045 (ETA18_19045) ssbB 3648662..3649003 (-) 342 WP_128993492.1 single-stranded DNA-binding protein SsbB Machinery gene
  ETA18_RS19050 (ETA18_19050) ywpG 3649080..3649463 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  ETA18_RS19055 (ETA18_19055) ywpF 3649638..3650048 (+) 411 WP_003227794.1 YwpF-like family protein -
  ETA18_RS19060 (ETA18_19060) - 3650188..3650580 (-) 393 Protein_3674 class A sortase -
  ETA18_RS19065 (ETA18_19065) ywpD 3650840..3651676 (+) 837 WP_026113665.1 histidine kinase -
  ETA18_RS19070 (ETA18_19070) mscL 3651723..3652118 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  ETA18_RS19075 (ETA18_19075) fabZ 3652191..3652616 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ETA18_RS19080 (ETA18_19080) rapD 3652808..3653872 (+) 1065 WP_128993493.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12461.17 Da        Isoelectric Point: 9.0177

>NTDB_id=340129 ETA18_RS19045 WP_128993492.1 3648662..3649003(-) (ssbB) [Bacillus subtilis strain SRCM103835]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAKGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=340129 ETA18_RS19045 WP_128993492.1 3648662..3649003(-) (ssbB) [Bacillus subtilis strain SRCM103835]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGAAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment