Detailed information    

insolico Bioinformatically predicted

Overview


Name   disA   Type   Machinery gene
Locus tag   F3K20_RS25360 Genome accession   NZ_CP043956
Coordinates   5765829..5766953 (-) Length   374 a.a.
NCBI ID   WP_037726228.1    Uniprot ID   -
Organism   Streptomyces sp. LBUM 1482     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 5760829..5771953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K20_RS25340 (F3K20_25695) - 5761325..5761876 (-) 552 WP_013001644.1 SigE family RNA polymerase sigma factor -
  F3K20_RS25345 (F3K20_25700) - 5762227..5763168 (-) 942 WP_210525062.1 A/G-specific adenine glycosylase -
  F3K20_RS25350 (F3K20_25705) - 5763558..5764616 (-) 1059 WP_013001642.1 LLM class flavin-dependent oxidoreductase -
  F3K20_RS25355 (F3K20_25710) - 5764904..5765728 (+) 825 WP_013001641.1 hypothetical protein -
  F3K20_RS25360 (F3K20_25715) disA 5765829..5766953 (-) 1125 WP_037726228.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  F3K20_RS25365 (F3K20_25720) radA/sms 5767034..5768443 (-) 1410 WP_013001639.1 DNA repair protein RadA Machinery gene
  F3K20_RS25370 (F3K20_25725) - 5768519..5769919 (-) 1401 WP_037726229.1 hypothetical protein -
  F3K20_RS25375 (F3K20_25730) - 5770135..5771853 (+) 1719 WP_013001637.1 sigma-70 family RNA polymerase sigma factor -

Sequence


Protein


Download         Length: 374 a.a.        Molecular weight: 40150.94 Da        Isoelectric Point: 5.1026

>NTDB_id=339814 F3K20_RS25360 WP_037726228.1 5765829..5766953(-) (disA) [Streptomyces sp. LBUM 1482]
MAANDRAAAPGKSGGSSGADGLMRASLSAVAPGTALRDGLERILRGNTGGLIVLGFDKTVEPMCTGGFVLDVEFTATRLR
ELCKLDGGIVLSSDLSKILRAGVQLVPDPTIPTEETGTRHRTADRVSKQVGFPVVSVSQSMRLIALYVDGHRRVLEDSAA
ILSRANQALATLERYKLRLDEVAGTLSALEIEDLVTVRDVSAVAQRLEMVRRIATEIAEYVVELGTDGRLLALQLDELIA
GVEPERELVVRDYVPEPTAKRSRTVDEALRELDALAHSELLELPTVARALGYTGSPEGMDSAVSPRGYRLLAKVPRLPGA
IIDRLVEHFGGLQKLLAASVDDLQTVDGVGEARARSVREGLSRLAESSILERYV

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=339814 F3K20_RS25360 WP_037726228.1 5765829..5766953(-) (disA) [Streptomyces sp. LBUM 1482]
GTGGCAGCCAACGACCGGGCAGCAGCTCCCGGAAAGTCCGGCGGGAGCTCCGGTGCCGATGGCCTGATGCGCGCCTCACT
GAGCGCCGTGGCACCAGGTACGGCCCTGCGCGACGGGCTGGAGCGGATTCTCCGCGGCAACACCGGCGGGCTCATCGTGC
TCGGCTTCGACAAGACCGTCGAGCCGATGTGCACCGGCGGTTTCGTCCTGGACGTCGAGTTCACGGCCACCCGTCTGCGG
GAGCTGTGCAAGCTCGACGGCGGCATCGTGCTCTCCTCGGACCTCTCCAAGATCCTCCGGGCGGGCGTGCAGCTGGTCCC
CGACCCGACGATCCCCACCGAGGAGACCGGCACCCGGCACCGCACGGCCGACCGGGTGAGCAAGCAGGTCGGCTTCCCGG
TCGTCTCGGTCTCCCAGTCGATGCGACTGATCGCGCTGTACGTCGACGGCCACCGGCGGGTCCTGGAGGACTCGGCGGCG
ATCCTGTCCCGCGCGAACCAGGCCCTGGCGACCCTGGAGCGGTACAAGCTCCGGCTGGACGAGGTGGCCGGCACCCTCTC
CGCGCTGGAGATCGAGGACCTGGTCACGGTCCGGGACGTGTCGGCGGTCGCCCAGCGCCTGGAGATGGTCCGCCGCATCG
CCACCGAAATCGCCGAATACGTGGTCGAACTGGGCACGGACGGCCGTCTTCTGGCCCTCCAGCTCGACGAGCTGATCGCG
GGCGTCGAGCCGGAGCGCGAACTGGTCGTGCGGGACTACGTCCCCGAGCCGACGGCCAAGCGCTCCCGCACGGTCGACGA
GGCCCTGCGCGAACTCGACGCCCTCGCCCACTCGGAGCTCCTCGAACTGCCCACCGTCGCCCGCGCCCTCGGCTACACCG
GCTCCCCGGAAGGCATGGACTCCGCGGTCTCCCCGCGCGGCTACCGCCTCCTGGCCAAGGTGCCCCGTCTGCCCGGTGCC
ATCATCGACCGCCTCGTGGAGCACTTCGGCGGTCTCCAGAAGCTCCTGGCCGCCAGCGTCGACGACCTCCAGACGGTCGA
CGGCGTGGGCGAGGCCCGCGCCCGCAGCGTCCGCGAGGGCCTGTCACGCCTGGCGGAGTCCTCGATCCTGGAGCGGTACG
TCTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  disA Bacillus subtilis subsp. subtilis str. 168

45.429

96.524

0.438


Multiple sequence alignment