Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AT571_RS04935 Genome accession   NZ_CP043910
Coordinates   1047003..1047467 (-) Length   154 a.a.
NCBI ID   WP_000993723.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB043     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1042003..1052467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT571_RS04915 (AT571_04915) - 1043685..1044068 (+) 384 WP_000090000.1 RidA family protein -
  AT571_RS04920 (AT571_04920) - 1044278..1044472 (+) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  AT571_RS04925 (AT571_04925) bfr 1044717..1045181 (+) 465 WP_000678124.1 bacterioferritin -
  AT571_RS04930 (AT571_04930) - 1045225..1046853 (-) 1629 WP_025467430.1 PglL family O-oligosaccharyltransferase -
  AT571_RS04935 (AT571_04935) pilA 1047003..1047467 (-) 465 WP_000993723.1 pilin Machinery gene
  AT571_RS04940 (AT571_04940) - 1047809..1048369 (-) 561 WP_000258957.1 TPM domain-containing protein -
  AT571_RS04945 (AT571_04945) - 1048363..1049445 (-) 1083 WP_001246375.1 TPM domain-containing protein -
  AT571_RS04950 (AT571_04950) - 1049467..1050057 (-) 591 WP_000846931.1 LemA family protein -
  AT571_RS04955 (AT571_04955) - 1050188..1051075 (-) 888 WP_001017325.1 metal-dependent hydrolase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 15445.69 Da        Isoelectric Point: 8.1130

>NTDB_id=339304 AT571_RS04935 WP_000993723.1 1047003..1047467(-) (pilA) [Acinetobacter baumannii strain AB043]
MNAQKGFTLIELMIVVAIIGILAAIAIPQYQKYTARSQITAALAEISPGKTQFELALSEGTANSVNNNPAAIGLKSTTNN
CSAVNVTANGTTGTIACTLQGSATITGGVLTLTRSADVAAASGVNANVGGWTCSITKGTTDISSVIAPKGCTII

Nucleotide


Download         Length: 465 bp        

>NTDB_id=339304 AT571_RS04935 WP_000993723.1 1047003..1047467(-) (pilA) [Acinetobacter baumannii strain AB043]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTCATGATCGTGGTTGCCATTATCGGTATTTTGGCAGCAATTGCGAT
TCCGCAATATCAGAAATACACTGCTCGTTCTCAAATTACAGCAGCATTGGCGGAAATCAGCCCAGGGAAAACTCAATTTG
AACTAGCTCTATCCGAAGGTACAGCTAACAGTGTGAATAATAACCCCGCAGCAATTGGTTTAAAAAGTACTACTAATAAT
TGTTCTGCTGTTAATGTAACTGCAAATGGAACTACTGGTACTATTGCATGTACGTTACAAGGCTCTGCTACAATTACTGG
TGGTGTTCTAACTTTAACACGTAGTGCAGATGTAGCAGCTGCTTCTGGAGTAAATGCAAATGTGGGTGGCTGGACATGTT
CTATTACTAAAGGAACAACAGATATTTCTTCAGTAATTGCTCCAAAAGGCTGTACAATAATTTAA

Domains

Predicted by InterProScan.

Pilin (bacterial filament) (Pilin)

(35-152)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

46.154

100

0.468
  pilA Pseudomonas aeruginosa PAK

42.073

100

0.448
  pilA Vibrio cholerae strain A1552

44.156

100

0.442
  pilA Vibrio cholerae C6706

44.156

100

0.442
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

44.156

100

0.442
  pilA/pilAII Pseudomonas stutzeri DSM 10701

45.333

97.403

0.442
  pilA/pilAI Pseudomonas stutzeri DSM 10701

48.529

88.312

0.429
  pilA Vibrio parahaemolyticus RIMD 2210633

39.333

97.403

0.383
  pilA Ralstonia pseudosolanacearum GMI1000

39.333

97.403

0.383
  pilA2 Legionella pneumophila str. Paris

42.963

87.662

0.377
  pilA2 Legionella pneumophila strain ERS1305867

42.963

87.662

0.377